4XR0A

Escherichia coli replication terminator protein (tus) complexed with dna- g/t mismatch.
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
308
structure length
308
Chain Sequence
ARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA replication terminus site-binding protein
publication title Replisome speed determines the efficiency of the Tus-Ter replication termination barrier.
pubmed doi rcsb
source organism Escherichia coli (strain k12)
molecule tags Replication/dna
total genus 86
structure length 308
sequence length 308
ec nomenclature
pdb deposition date 2015-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05472 Ter DNA replication terminus site-binding protein (Ter protein)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.54.10 Alpha Beta 2-Layer Sandwich Replication Terminator Protein; Chain A, domain 2 Replication Terminator Protein; Chain A, domain 2 4xr0A02
3.50.14.10 Alpha Beta 3-Layer(bba) Sandwich Replication Terminator Protein (Tus); Chain A, domain 1 Replication terminator Tus, domain 1 superfamily/Replication terminator Tus 4xr0A01
4XR2A 4XR3A 1ECRA 4XR0A 2I05A 4XR1A 2EWJA 2I06A
chains in the Genus database with same CATH superfamily
2ZZEA 2ZTGA 1TKYA 2ZZFA 1WXOA 4XR2A 3WQZA 1TKGA 1TKEA 2ZZGA 4XR1A 1QF6A 1TJEA 4XR3A 1ECRA 3RFNA 1WNUA 3RHUA 1V7OA 4XR0A 2I05A 1V4PA 2EWJA 2I06A
chains in the Genus database with same CATH topology
2ZZEA 2ZTGA 1TKYA 2ZZFA 1WXOA 4XR2A 3WQZA 1TKGA 1TKEA 2ZZGA 4XR1A 1QF6A 1TJEA 4XR3A 1ECRA 3RFNA 1WNUA 3RHUA 1V7OA 4XR0A 2I05A 1V4PA 2EWJA 2I06A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XR2 A;  4XR3 A;  1ECR A;  4XR0 A;  2I05 A;  4XR1 A;  2EWJ A;  2I06 A; 
#chains in the Genus database with same CATH topology
 2ZZE A;  2ZTG A;  1TKY A;  2ZZF A;  1WXO A;  4XR2 A;  3WQZ A;  1TKG A;  1TKE A;  2ZZG A;  4XR1 A;  1QF6 A;  1TJE A;  4XR3 A;  1ECR A;  3RFN A;  1WNU A;  3RHU A;  1V7O A;  4XR0 A;  2I05 A;  1V4P A;  2EWJ A;  2I06 A; 
#chains in the Genus database with same CATH homology
 2ZZE A;  2ZTG A;  1TKY A;  2ZZF A;  1WXO A;  4XR2 A;  3WQZ A;  1TKG A;  1TKE A;  2ZZG A;  4XR1 A;  1QF6 A;  1TJE A;  4XR3 A;  1ECR A;  3RFN A;  1WNU A;  3RHU A;  1V7O A;  4XR0 A;  2I05 A;  1V4P A;  2EWJ A;  2I06 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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