2EWJA

Escherichia coli replication terminator protein (tus) complexed with dna- locked form
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
305
structure length
305
Chain Sequence
DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A molecular mousetrap determines polarity of termination of DNA replication in E. coli.
pubmed doi rcsb
molecule tags Replication/dna
source organism Escherichia coli
molecule keywords 5'-D(*T*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3'
total genus 82
structure length 305
sequence length 305
ec nomenclature
pdb deposition date 2005-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05472 Ter DNA replication terminus site-binding protein (Ter protein)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.54.10 Alpha Beta 2-Layer Sandwich Replication Terminator Protein; Chain A, domain 2 Replication Terminator Protein; Chain A, domain 2 2ewjA02
3.50.14.10 Alpha Beta 3-Layer(bba) Sandwich Replication Terminator Protein (Tus); Chain A, domain 1 Replication terminator Tus, domain 1 superfamily/Replication terminator Tus 2ewjA01
1ECRA 2I06A 2EWJA 4XR1A 2I05A 4XR2A 4XR3A 4XR0A
chains in the Genus database with same CATH superfamily
2I06A 2EWJA 1WXOA 3RFNA 4XR3A 2ZTGA 2ZZEA 3RHUA 2ZZGA 4XR2A 1WNUA 1V4PA 1ECRA 1TJEA 4XR1A 3WQZA 1V7OA 1QF6A 2I05A 1TKGA 4XR0A 1TKEA 2ZZFA 1TKYA
chains in the Genus database with same CATH topology
2I06A 2EWJA 1WXOA 3RFNA 4XR3A 2ZTGA 2ZZEA 3RHUA 2ZZGA 4XR2A 1WNUA 1V4PA 1ECRA 1TJEA 4XR1A 3WQZA 1V7OA 1QF6A 2I05A 1TKGA 4XR0A 1TKEA 2ZZFA 1TKYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ECR A;  2I06 A;  2EWJ A;  4XR1 A;  2I05 A;  4XR2 A;  4XR3 A;  4XR0 A; 
#chains in the Genus database with same CATH topology
 2I06 A;  2EWJ A;  1WXO A;  3RFN A;  4XR3 A;  2ZTG A;  2ZZE A;  3RHU A;  2ZZG A;  4XR2 A;  1WNU A;  1V4P A;  1ECR A;  1TJE A;  4XR1 A;  3WQZ A;  1V7O A;  1QF6 A;  2I05 A;  1TKG A;  4XR0 A;  1TKE A;  2ZZF A;  1TKY A; 
#chains in the Genus database with same CATH homology
 2I06 A;  2EWJ A;  1WXO A;  3RFN A;  4XR3 A;  2ZTG A;  2ZZE A;  3RHU A;  2ZZG A;  4XR2 A;  1WNU A;  1V4P A;  1ECR A;  1TJE A;  4XR1 A;  3WQZ A;  1V7O A;  1QF6 A;  2I05 A;  1TKG A;  4XR0 A;  1TKE A;  2ZZF A;  1TKY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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