The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
14
|
sequence length |
40
|
structure length |
40
|
Chain Sequence |
DACEQAAIQCVESACESLCTEGEDRTGCYMYIYSNCPPYV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A challenging case for protein crystal structure determination: the mating pheromone Er-1 from Euplotes raikovi.
pubmed doi rcsb |
| molecule tags |
Pheromone
|
| molecule keywords |
MATING PHEROMONE ER-1
|
| total genus |
14
|
| structure length |
40
|
| sequence length |
40
|
| ec nomenclature | |
| pdb deposition date | 1995-12-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06360 | E_raikovi_mat | Euplotes raikovi mating pheromone |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Pheromone ER-1 | Pheromone ER-1 |
#chains in the Genus database with same CATH superfamily 2ERL A; 1ERC A; #chains in the Genus database with same CATH topology 2LMK A; 4EDK A; 3CU7 A; 2B39 A; 2KC6 A; 4EE1 A; 4EDV A; 3KLS A; 2JMS A; 1EQN A; 2AU3 A; 4E2K A; 4EDG A; 2NSV A; 2NSW A; 1DDE A; 4EDR A; 2KK2 A; 2ERL A; 1DD9 A; 4EDT A; 3B39 A; 1ERC A; 3KXR A; #chains in the Genus database with same CATH homology 2LMK A; 4EDK A; 3CU7 A; 2B39 A; 2KC6 A; 4EE1 A; 4EDV A; 3KLS A; 2JMS A; 1EQN A; 2AU3 A; 4E2K A; 4EDG A; 2NSV A; 2NSW A; 1DDE A; 4EDR A; 2KK2 A; 2ERL A; 1DD9 A; 4EDT A; 3B39 A; 1ERC A; 3KXR A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
