2KK2 | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	61
structure length	61
Chain Sequence	YNPEDDYTPLTCPHTISVVWYECTENTANCGTACCDSCFELTGNTMCLLQAGAAGSGCDME

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 61 atoms

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61 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
publication title	Antarctic and Arctic populations of the ciliate Euplotes nobilii show common pheromone-mediated cell-cell signaling and cross-mating. pubmed doi rcsb
molecule keywords	En-A1
total genus	18
structure length	61
sequence length	61
ec nomenclature
pdb deposition date	2009-06-15

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.50.40	Mainly Alpha	Up-down Bundle	Pheromone ER-1	Pheromone ER-1	2kk2A00

2KC6A 2NSWA 2NSVA 2JMSA 2KK2A
chains in the Genus database with same CATH superfamily

2LMKA 4EE1A 2NSWA 2NSVA 4EDTA 3B39A 1DDEA 4EDRA 3KXRA 3KLSA 1DD9A 3CU7A 1ERCA 4E2KA 2AU3A 2ERLA 2KK2A 2KC6A 1EQNA 4EDVA 4EDGA 2JMSA 4EDKA 2B39A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2KC6 A;  2NSW A;  2NSV A;  2JMS A;  2KK2 A; 
#chains in the Genus database with same CATH topology
 2LMK A;  4EE1 A;  2NSW A;  2NSV A;  4EDT A;  3B39 A;  1DDE A;  4EDR A;  3KXR A;  3KLS A;  1DD9 A;  3CU7 A;  1ERC A;  4E2K A;  2AU3 A;  2ERL A;  2KK2 A;  2KC6 A;  1EQN A;  4EDV A;  4EDG A;  2JMS A;  4EDK A;  2B39 A; 
#chains in the Genus database with same CATH homology
 2LMK A;  4EE1 A;  2NSW A;  2NSV A;  4EDT A;  3B39 A;  1DDE A;  4EDR A;  3KXR A;  3KLS A;  1DD9 A;  3CU7 A;  1ERC A;  4E2K A;  2AU3 A;  2ERL A;  2KK2 A;  2KC6 A;  1EQN A;  4EDV A;  4EDG A;  2JMS A;  4EDK A;  2B39 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2KK2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN