2LW5 | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	78
structure length	78
Chain Sequence	MKFIKYLSTAHLNYMNIAVYENGSKIKARVENVVNGKSVGARDFDSTEQLESWFYGLPGSGLGRIENAMNEISRRENP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 78 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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78 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Pseudomonas phage jbd30
publication title	Discovery of phage genes that allow evasion of the CRISPR/Cas bacterial immune system rcsb
molecule keywords	ACR30-35
total genus	9
structure length	78
sequence length	78
ec nomenclature
pdb deposition date	2012-07-22

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.67.30	Alpha Beta	2-Layer Sandwich	Viral Envelope Glycoprotein; domain 2	Viral Envelope Glycoprotein; domain 2	2lw5A00

2LW5A
chains in the Genus database with same CATH superfamily

5IREA 3C6EA 4ADGA 5LCVA 3C5XA 2I69A 5JHMA 1OK8A 5GZOA 4FG0A 4UTBA 3J2PA 3J27A 5LBVA 1URZA 1TG8A 4ADIA 4GT0A 1OKEA 5LBSA 4UTAA 4GSXA 4UT6A 5IZ7A 4B3VA 4ADJA 4UT9A 4UTCA 3P54A 5GZNA 5H37A 5JHLA 1SVBA 3G7TA 2LW5A 2HG0A 1UZGA 1OANA 3UAJA
chains in the Genus database with same CATH topology

4ADGA 4ADIA 4B3VA 2LW5A 4ADJA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2LW5 A; 
#chains in the Genus database with same CATH topology
 5IRE A;  3C6E A;  4ADG A;  5LCV A;  3C5X A;  2I69 A;  5JHM A;  1OK8 A;  5GZO A;  4FG0 A;  4UTB A;  3J2P A;  3J27 A;  5LBV A;  1URZ A;  1TG8 A;  4ADI A;  4GT0 A;  1OKE A;  5LBS A;  4UTA A;  4GSX A;  4UT6 A;  5IZ7 A;  4B3V A;  4ADJ A;  4UT9 A;  4UTC A;  3P54 A;  5GZN A;  5H37 A;  5JHL A;  1SVB A;  3G7T A;  2LW5 A;  2HG0 A;  1UZG A;  1OAN A;  3UAJ A; 
#chains in the Genus database with same CATH homology
 4ADG A;  4ADI A;  4B3V A;  2LW5 A;  4ADJ A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2LW5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN