2Y3UA

Crystal structure of apo collagenase g from clostridium histolyticum at 2.55 angstrom resolution
Total Genus 235
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
235
sequence length
681
structure length
679
Chain Sequence
b'NLYFQGGTMYDFEYLNGLSYTELTNLIKNIKWNQINGLFNYSTGSQKFFGDKNRVQAIINALQESGRTYTANDMKGIETFTEVLRAGFYLGYYNDGLSYLNDRNFQDKCIPAMIAIQKNPNFKLGTAVQDEVITSLGKLIGNASANAEVVNNCVPVLKQFRENLNQYAPDYVKGTAVNELIKGIEFDFSGAAYEKDVKTMPWYGKIDPFINELKALGLYGNITSATEWASDVGIYYLSKFGLYSTNRNDIVQSLEKAVDMYKYGKIAFVAMERITWDYDGIGSNGKKVDHDKFLDDAEKHYLPKTYTFDNGTFIIRAGDKVSEEKIKRLYWASREVKSQFHRVVGNDKALEVGNADDVLTMKIFNSPEEYKFNTNINGVSTDNGGLYIEPRGTFYTYERTPQQSIFSLEELFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAGSTRTSGVLPRKLILGYLAKDKVDHRYSLKKTLNSDDSDWMFYNYGFAVAHYLYEKDMPTFIKMNKAILNTDVKSYDEIIKKLSDDANKNTEYQNHIQELVDKYQGAGIPLVSDDYLKDHGYKKASEVYSEISKAASLTNTSVTAEKSQYFNTFTLRGTYTGETSKGEFKDWDEMSKKLDGTLESLAKNSWSGYKTLTAYFTNYRVTSDNKVQYDVVFHGVLTDNG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords COLLAGENASE
publication title Structure of Collagenase G Reveals a Chew-and -Digest Mechanism of Bacterial Collagenolysis
pubmed doi rcsb
source organism Clostridium histolyticum
molecule tags Hydrolase
total genus 235
structure length 679
sequence length 681
ec nomenclature ec 3.4.24.3: Microbial collagenase.
pdb deposition date 2010-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00801 PKD PKD domain
A PF01752 Peptidase_M9 Collagenase
A PF08453 Peptidase_M9_N Peptidase family M9 N-terminal
A PF18496 ColG_sub Collagenase G catalytic helper subdomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.980.50 Alpha Beta 2-Layer Sandwich Threonyl-tRNA Synthetase; Chain A, domain 2 Threonyl-tRNA Synthetase; Chain A, domain 2 2y3uA02
4ARFA 2Y3UA 2Y50A 4AR8A 4AREA 4AR9A 2Y6IA 4AR1A
chains in the Genus database with same CATH superfamily
3I7PA 4CI3A 4A0AA 3WQZA 2Y3UA 1QF6A 2ZZFA 1TJEA 3ZTYA 4A11A 4AREA 4CI2A 3I7OA 2B5LA 2Y6IA 4TZ4A 3ZWDA 2HYEA 2IUSA 4AR1A 4A09A 4ARFA 4E54A 5FQDA 1WXOA 3E0CA 3I8CA 2Y50A 3I7LA 3I7NA 3I7KA 4AR9A 1TKGA 2IUUA 2ZZEA 2ZOSA 1TKYA 3RHUA 2E1BA 3EI1A 3ZX4A 4CI1A 3I89A 1NYQA 3ZW7A 4AR8A 3KEWA 3ZX5A 3I7HA 1NYRA 4E5ZA 4A0BA 1V4PA 1V7OA 3EI4A 1TKEA 2ZTGA 3EI2A 1WZCA 2IUTA 3ZTWA 1XVIA 4A08A 3RFNA 3EI3A 2B5MA 3ZU6A 2ZZGA 3I8EA 3ZWKA 1WNUA 3ZUPA
chains in the Genus database with same CATH topology
3I7PA 4CI3A 4A0AA 3WQZA 2Y3UA 1QF6A 2ZZFA 1TJEA 4A11A 4AREA 4CI2A 2HYEA 3I7OA 2B5LA 2Y6IA 4TZ4A 4E5ZA 2IUSA 4AR1A 4A09A 4ARFA 4E54A 5FQDA 1WXOA 3E0CA 3I8CA 2Y50A 3I7LA 3I7NA 3I7KA 4AR9A 1TKGA 2IUUA 2ZZEA 3RHUA 1TKYA 2E1BA 3EI1A 4CI1A 3I89A 1NYQA 4AR8A 3KEWA 3I7HA 1NYRA 4A0BA 1V4PA 1V7OA 3EI4A 1TKEA 2ZTGA 3EI2A 2IUTA 4A08A 3RFNA 3EI3A 2B5MA 2ZZGA 3I8EA 1WNUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ARF A;  2Y3U A;  2Y50 A;  4AR8 A;  4ARE A;  4AR9 A;  2Y6I A;  4AR1 A; 
#chains in the Genus database with same CATH topology
 3I7P A;  4CI3 A;  4A0A A;  3WQZ A;  2Y3U A;  1QF6 A;  2ZZF A;  1TJE A;  3ZTY A;  4A11 A;  4ARE A;  4CI2 A;  3I7O A;  2B5L A;  2Y6I A;  4TZ4 A;  3ZWD A;  2HYE A;  2IUS A;  4AR1 A;  4A09 A;  4ARF A;  4E54 A;  5FQD A;  1WXO A;  3E0C A;  3I8C A;  2Y50 A;  3I7L A;  3I7N A;  3I7K A;  4AR9 A;  1TKG A;  2IUU A;  2ZZE A;  2ZOS A;  1TKY A;  3RHU A;  2E1B A;  3EI1 A;  3ZX4 A;  4CI1 A;  3I89 A;  1NYQ A;  3ZW7 A;  4AR8 A;  3KEW A;  3ZX5 A;  3I7H A;  1NYR A;  4E5Z A;  4A0B A;  1V4P A;  1V7O A;  3EI4 A;  1TKE A;  2ZTG A;  3EI2 A;  1WZC A;  2IUT A;  3ZTW A;  1XVI A;  4A08 A;  3RFN A;  3EI3 A;  2B5M A;  3ZU6 A;  2ZZG A;  3I8E A;  3ZWK A;  1WNU A;  3ZUP A; 
#chains in the Genus database with same CATH homology
 3I7P A;  4CI3 A;  4A0A A;  3WQZ A;  2Y3U A;  1QF6 A;  2ZZF A;  1TJE A;  4A11 A;  4ARE A;  4CI2 A;  2HYE A;  3I7O A;  2B5L A;  2Y6I A;  4TZ4 A;  4E5Z A;  2IUS A;  4AR1 A;  4A09 A;  4ARF A;  4E54 A;  5FQD A;  1WXO A;  3E0C A;  3I8C A;  2Y50 A;  3I7L A;  3I7N A;  3I7K A;  4AR9 A;  1TKG A;  2IUU A;  2ZZE A;  3RHU A;  1TKY A;  2E1B A;  3EI1 A;  4CI1 A;  3I89 A;  1NYQ A;  4AR8 A;  3KEW A;  3I7H A;  1NYR A;  4A0B A;  1V4P A;  1V7O A;  3EI4 A;  1TKE A;  2ZTG A;  3EI2 A;  2IUT A;  4A08 A;  3RFN A;  3EI3 A;  2B5M A;  2ZZG A;  3I8E A;  1WNU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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