2Y3UA

Crystal structure of apo collagenase g from clostridium histolyticum at 2.55 angstrom resolution
Total Genus 235
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
235
sequence length
681
structure length
679
Chain Sequence
NLYFQGGTMYDFEYLNGLSYTELTNLIKNIKWNQINGLFNYSTGSQKFFGDKNRVQAIINALQESGRTYTANDMKGIETFTEVLRAGFYLGYYNDGLSYLNDRNFQDKCIPAMIAIQKNPNFKLGTAVQDEVITSLGKLIGNASANAEVVNNCVPVLKQFRENLNQYAPDYVKGTAVNELIKGIEFDFSGAAYEKDVKTMPWYGKIDPFINELKALGLYGNITSATEWASDVGIYYLSKFGLYSTNRNDIVQSLEKAVDMYKYGKIAFVAMERITWDYDGIGSNGKKVDHDKFLDDAEKHYLPKTYTFDNGTFIIRAGDKVSEEKIKRLYWASREVKSQFHRVVGNDKALEVGNADDVLTMKIFNSPEEYKFNTNINGVSTDNGGLYIEPRGTFYTYERTPQQSIFSLEELFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAGSTRTSGVLPRKLILGYLAKDKVDHRYSLKKTLNSDDSDWMFYNYGFAVAHYLYEKDMPTFIKMNKAILNTDVKSYDEIIKKLSDDANKNTEYQNHIQELVDKYQGAGIPLVSDDYLKDHGYKKASEVYSEISKAASLTNTSVTAEKSQYFNTFTLRGTYTGETSKGEFKDWDEMSKKLDGTLESLAKNSWSGYKTLTAYFTNYRVTSDNKVQYDVVFHGVLTDNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of Collagenase G Reveals a Chew-and -Digest Mechanism of Bacterial Collagenolysis
pubmed doi rcsb
source organism Clostridium histolyticum
molecule tags Hydrolase
molecule keywords COLLAGENASE
total genus 235
structure length 679
sequence length 681
ec nomenclature ec 3.4.24.3: Microbial collagenase.
pdb deposition date 2010-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00801 PKD PKD domain
A PF01752 Peptidase_M9 Collagenase
A PF08453 Peptidase_M9_N Peptidase family M9 N-terminal
A PF18496 ColG_sub Collagenase G catalytic helper subdomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.980.50 Alpha Beta 2-Layer Sandwich Threonyl-tRNA Synthetase; Chain A, domain 2 Threonyl-tRNA Synthetase; Chain A, domain 2 2y3uA02
4AR1A 2Y6IA 4ARFA 4AR9A 2Y3UA 4AR8A 4AREA 2Y50A
chains in the Genus database with same CATH superfamily
1NYQA 2IUTA 3I7NA 3EI3A 4AR1A 3ZU6A 3ZX5A 2B5MA 1TJEA 1TKGA 2Y3UA 3ZWKA 3ZWDA 3ZW7A 5FQDA 1V7OA 2E1BA 3I7PA 3ZTYA 2B5LA 2IUSA 4E5ZA 4E54A 3RHUA 1TKYA 4TZ4A 1V4PA 3KEWA 4A0AA 3WQZA 4CI3A 3EI4A 3I7OA 1WNUA 2ZZEA 3I8EA 4AREA 1WZCA 3I7LA 4AR9A 3I89A 2ZZGA 2ZOSA 4A09A 3ZUPA 3EI2A 1TKEA 4CI2A 1XVIA 4CI1A 1NYRA 4AR8A 1WXOA 3RFNA 3EI1A 4A0BA 3E0CA 2HYEA 2Y50A 2Y6IA 3ZX4A 2ZTGA 4ARFA 3ZTWA 2ZZFA 1QF6A 2IUUA 3I7KA 3I8CA 4A08A 4A11A 3I7HA
chains in the Genus database with same CATH topology
1NYQA 2IUTA 3I7NA 3EI3A 4AR1A 2B5MA 1TJEA 1TKGA 2Y3UA 5FQDA 1V7OA 2E1BA 3I7PA 4E5ZA 2B5LA 2IUSA 4E54A 3RHUA 1TKYA 4TZ4A 1V4PA 3KEWA 4A0AA 3WQZA 4CI3A 3EI4A 3I7OA 2ZZEA 1WNUA 3I8EA 4AREA 3I7LA 4AR9A 3I89A 2ZZGA 4A09A 3EI2A 1TKEA 4CI2A 4CI1A 1NYRA 4AR8A 1WXOA 3RFNA 3EI1A 4A0BA 3E0CA 2HYEA 2Y50A 2Y6IA 2ZTGA 4ARFA 2ZZFA 1QF6A 2IUUA 3I7KA 3I8CA 4A08A 4A11A 3I7HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AR1 A;  2Y6I A;  4ARF A;  4AR9 A;  2Y3U A;  4AR8 A;  4ARE A;  2Y50 A; 
#chains in the Genus database with same CATH topology
 1NYQ A;  2IUT A;  3I7N A;  3EI3 A;  4AR1 A;  3ZU6 A;  3ZX5 A;  2B5M A;  1TJE A;  1TKG A;  2Y3U A;  3ZWK A;  3ZWD A;  3ZW7 A;  5FQD A;  1V7O A;  2E1B A;  3I7P A;  3ZTY A;  2B5L A;  2IUS A;  4E5Z A;  4E54 A;  3RHU A;  1TKY A;  4TZ4 A;  1V4P A;  3KEW A;  4A0A A;  3WQZ A;  4CI3 A;  3EI4 A;  3I7O A;  1WNU A;  2ZZE A;  3I8E A;  4ARE A;  1WZC A;  3I7L A;  4AR9 A;  3I89 A;  2ZZG A;  2ZOS A;  4A09 A;  3ZUP A;  3EI2 A;  1TKE A;  4CI2 A;  1XVI A;  4CI1 A;  1NYR A;  4AR8 A;  1WXO A;  3RFN A;  3EI1 A;  4A0B A;  3E0C A;  2HYE A;  2Y50 A;  2Y6I A;  3ZX4 A;  2ZTG A;  4ARF A;  3ZTW A;  2ZZF A;  1QF6 A;  2IUU A;  3I7K A;  3I8C A;  4A08 A;  4A11 A;  3I7H A; 
#chains in the Genus database with same CATH homology
 1NYQ A;  2IUT A;  3I7N A;  3EI3 A;  4AR1 A;  2B5M A;  1TJE A;  1TKG A;  2Y3U A;  5FQD A;  1V7O A;  2E1B A;  3I7P A;  4E5Z A;  2B5L A;  2IUS A;  4E54 A;  3RHU A;  1TKY A;  4TZ4 A;  1V4P A;  3KEW A;  4A0A A;  3WQZ A;  4CI3 A;  3EI4 A;  3I7O A;  2ZZE A;  1WNU A;  3I8E A;  4ARE A;  3I7L A;  4AR9 A;  3I89 A;  2ZZG A;  4A09 A;  3EI2 A;  1TKE A;  4CI2 A;  4CI1 A;  1NYR A;  4AR8 A;  1WXO A;  3RFN A;  3EI1 A;  4A0B A;  3E0C A;  2HYE A;  2Y50 A;  2Y6I A;  2ZTG A;  4ARF A;  2ZZF A;  1QF6 A;  2IUU A;  3I7K A;  3I8C A;  4A08 A;  4A11 A;  3I7H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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