The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
242
|
sequence length |
674
|
structure length |
672
|
Chain Sequence |
TMYDFEYLNGLSYTELTNLIKNIKWNQINGLFNYSTGSQKFFGDKNRVQAIINALQESGRTYTANDMKGIETFTEVLRAGFYLGYYNDGLSYLNDRNFQDKCIPAMIAIQKNPNFKLGTAVQDEVITSLGKLIGNASANAEVVNNCVPVLKQFRENLNQYAPDYVKGTAVNELIKGIEFDFSGAAYEKDVKTMPWYGKIDPFINELKALGLYGNITSATEWASDVGIYYLSKFGLYSTNRNDIVQSLEKAVDMYKYGKIAFVAMERITWDYDGIGSNGKKVDHDKFLDDAEKHYLPKTYTFDNGTFIIRAGDKVSEEKIKRLYWASREVKSQFHRVVGNDKALEVGNADDVLTMKIFNSPEEYKFNTNINGVSTDNGGLYIEPRGTFYTYERTPQQSIFSLEELFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAGSTRTSGVLPRKLILGYLAKDKVDHRYSLKKTLNSDDSDWMFYNYGFAVAHYLYEKDMPTFIKMNKAILNTDVKSYDEIIKKLSDDANKNTEYQNHIQELVDKYQGAGIPLVSDDYLKDHGYKKASEVYSEISKAASLTNTSVTAEKSQYFNTFTLRGTYTGETSKGEFKDWDEMSKKLDGTLESLAKNSWSGYKTLTAYFTNYRVTSDNKVQYDVVFHGVLTDNG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of Collagenase G Reveals a Chew-and -Digest Mechanism of Bacterial Collagenolysis
pubmed doi rcsb |
| molecule keywords |
COLLAGENASE
|
| molecule tags |
Hydrolase
|
| source organism |
Clostridium histolyticum
|
| total genus |
242
|
| structure length |
672
|
| sequence length |
674
|
| ec nomenclature |
ec
3.4.24.3: Microbial collagenase. |
| pdb deposition date | 2011-01-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00801 | PKD | PKD domain |
| A | PF01752 | Peptidase_M9 | Collagenase |
| A | PF08453 | Peptidase_M9_N | Peptidase family M9 N-terminal |
| A | PF18496 | ColG_sub | Collagenase G catalytic helper subdomain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Threonyl-tRNA Synthetase; Chain A, domain 2 | Threonyl-tRNA Synthetase; Chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 4AR1 A; 2Y50 A; 2Y6I A; 4AR8 A; 2Y3U A; 4AR9 A; 4ARE A; 4ARF A; #chains in the Genus database with same CATH topology 3ZX4 A; 3RHU A; 2Y50 A; 3ZX5 A; 3EI2 A; 2Y6I A; 2ZZG A; 2B5M A; 1TKE A; 2Y3U A; 3I7H A; 3EI4 A; 3EI1 A; 4AR9 A; 4ARE A; 2E1B A; 4E5Z A; 4A11 A; 4CI3 A; 3I8C A; 3I7K A; 1V4P A; 4A0B A; 1V7O A; 1NYR A; 4CI1 A; 4TZ4 A; 3ZWK A; 2ZOS A; 3ZU6 A; 4A09 A; 3KEW A; 4AR8 A; 3I7O A; 1TKY A; 3ZWD A; 1WXO A; 5FQD A; 2IUT A; 2ZZF A; 1QF6 A; 4A08 A; 3I7P A; 3I8E A; 3EI3 A; 2IUU A; 3ZTW A; 1NYQ A; 4AR1 A; 1XVI A; 3ZW7 A; 4ARF A; 2HYE A; 3WQZ A; 2B5L A; 3I89 A; 2ZTG A; 3I7N A; 4CI2 A; 3RFN A; 4A0A A; 1TKG A; 3I7L A; 2ZZE A; 4E54 A; 1TJE A; 3ZUP A; 3ZTY A; 1WZC A; 3E0C A; 2IUS A; 1WNU A; #chains in the Genus database with same CATH homology 3RHU A; 2Y50 A; 3EI2 A; 2Y6I A; 2ZZG A; 2B5M A; 1TKE A; 2Y3U A; 3I7H A; 3EI4 A; 3EI1 A; 4AR9 A; 4ARE A; 2E1B A; 4E5Z A; 4A11 A; 4CI3 A; 3I8C A; 3I7K A; 1V4P A; 4A0B A; 1V7O A; 1NYR A; 4CI1 A; 4TZ4 A; 4A09 A; 3KEW A; 4AR8 A; 3I7O A; 1TKY A; 1WXO A; 5FQD A; 2IUT A; 2ZZF A; 1QF6 A; 4A08 A; 3I7P A; 3I8E A; 3EI3 A; 2IUU A; 4AR1 A; 1NYQ A; 4ARF A; 4A0A A; 2HYE A; 3WQZ A; 2B5L A; 3I89 A; 2ZTG A; 3I7N A; 4CI2 A; 3RFN A; 4E54 A; 1TKG A; 3I7L A; 2ZZE A; 1TJE A; 3E0C A; 2IUS A; 1WNU A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
