2I05 | Genus

Total Genus 81

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	81
sequence length	305
structure length	305
Chain Sequence	DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 305 atoms

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305 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Replication/dna
source organism	Escherichia coli
publication title	Polarity of Termination of DNA Replication in E. coli rcsb
molecule keywords	5'-D(TTPAPGPTPTPAPCPAPAPCPAPTPAPCPT)-3'
total genus	81
structure length	305
sequence length	305
ec nomenclature
pdb deposition date	2006-08-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05472	Ter	DNA replication terminus site-binding protein (Ter protein)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.54.10	Alpha Beta	2-Layer Sandwich	Replication Terminator Protein; Chain A, domain 2	Replication Terminator Protein; Chain A, domain 2	2i05A02
3.50.14.10	Alpha Beta	3-Layer(bba) Sandwich	Replication Terminator Protein (Tus); Chain A, domain 1	Replication terminator Tus, domain 1 superfamily/Replication terminator Tus	2i05A01

2EWJA 4XR0A 2I06A 4XR2A 4XR3A 2I05A 4XR1A 1ECRA
chains in the Genus database with same CATH superfamily

4XR2A 1WXOA 1TJEA 2ZZGA 4XR1A 2ZZEA 3RHUA 1TKYA 4XR0A 2ZTGA 4XR3A 1ECRA 1TKGA 3RFNA 2I06A 2I05A 1V4PA 3WQZA 2EWJA 1WNUA 1V7OA 2ZZFA 1TKEA 1QF6A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2EWJ A;  4XR0 A;  2I06 A;  4XR2 A;  4XR3 A;  2I05 A;  4XR1 A;  1ECR A; 
#chains in the Genus database with same CATH topology
 4XR2 A;  1WXO A;  1TJE A;  2ZZG A;  4XR1 A;  2ZZE A;  3RHU A;  1TKY A;  4XR0 A;  2ZTG A;  4XR3 A;  1ECR A;  1TKG A;  3RFN A;  2I06 A;  2I05 A;  1V4P A;  3WQZ A;  2EWJ A;  1WNU A;  1V7O A;  2ZZF A;  1TKE A;  1QF6 A; 
#chains in the Genus database with same CATH homology
 4XR2 A;  1WXO A;  1TJE A;  2ZZG A;  4XR1 A;  2ZZE A;  3RHU A;  1TKY A;  4XR0 A;  2ZTG A;  4XR3 A;  1ECR A;  1TKG A;  3RFN A;  2I06 A;  2I05 A;  1V4P A;  3WQZ A;  2EWJ A;  1WNU A;  1V7O A;  2ZZF A;  1TKE A;  1QF6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2I05A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations