3HQJA

Structure-function analysis of mycobacterium tuberculosis acyl carrier protein synthase (acps).
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
129
structure length
113
Chain Sequence
GIVGVGIDLVSIPDFAEQVDTFTPGERRDASSAARHLAARWAAKEAVIKAWSGSRFAQRPMIHRDIEVVTDMWGRPRVRLTGAIAEYLADVTIHVSLTHEGDTAAAVAILEAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
3H1 (80-82)AH2 (33-67)S2 (83-87)TI1 (88-91)S3 (93-97)S4 (109-117)TI2 (105-108)AH3 (99-105)EMPTYS1 (3-12)AH1 (13-20)TII1 (68-71)Updating...
connected with : NaN
publication title Structure-function analysis of the acyl carrier protein synthase (AcpS) from Mycobacterium tuberculosis.
pubmed doi rcsb
molecule keywords Holo-[acyl-carrier-protein] synthase
molecule tags Transferase
source organism Mycobacterium tuberculosis
total genus 29
structure length 113
sequence length 129
ec nomenclature ec 2.7.8.7: Holo-[acyl-carrier-protein] synthase.
pdb deposition date 2009-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01648 ACPS 4'-phosphopantetheinyl transferase superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.20 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A 4'-phosphopantetheinyl transferase domain 3hqjA00
1F7LA 2JCAA 2WASA 4HC6A 5CMOA 3QMNA 3GWMA 2WDSA 2C43A 1F80A 4DXEA 3HQJA 2QG8A 3NE1A 3NE3B 4JM7A 5CXDA 1F7TA 3H7QA 2BDDA 2WDYA 2WATA 2BYDA 3HYKA 1FTHA 1FTFA 4MRTA 1FTEA 2WASB 3NFDA 2JBZA 1QR0A 3NE9A 2WDOA 2CG5A
chains in the Genus database with same CATH superfamily
1VQLR 5GAHT 3CCSR 1YJ9R 1YIJR 1VQ7R 1VQMR 2QG8A 3NE1A 3NE3B 2BYDA 4IO9P 3CCER 1S72R 3CCQR 1FTFA 1N8RS 3CMER 1NJIS 1YHQR 1VQ4R 1KC8S 2D0OA 3CMAR 5DM6P 3CC7R 3CCRR 1YITR 2JCAA 2OTLR 5CMOA 1M1KS 3CCMR 3CC4R 2QA4R 2C43A 1BXEA 2WDSA 1VQKR 4DXEA 1Q7YS 3PIOP 1M90S 1Q81S 4IOAP 2WDYA 1YJNR 3HYKA 4U67P 1QVGQ 1FTEA 4V19W 5JVHP 1K9MS 2JBZA 4WF9P 3CPWQ 4WFBP 3NE9A 1VQNR 3G71R 1VQ9R 1K73S 1F7LA 3J7ZS 3CF5P 4HC6A 5H1SU 3J7YT 1VQ5R 3I55R 1F80A 3DLLP 4JM7A 5CXDA 4IOCP 3H7QA 2BDDA 2WATA 3G4SR 2ZJQP 1FTHA 3CCUR 1W2BQ 1I4JA 4WFNP 3CCJR 1KQSQ 1YI2R 3NFDA 4WFAP 1Q86S 3CCVR 1VQPR 3CC2R 1QR0A 5GADT 3CCLR 3CD6R 1NBWA 1VQOR 4WCEP 2CG5A 3G6ER 1K8AS 2WASA 5GAET 3CXCQ 3QMNA 2D0PA 1Q82S 3GWMA 3PIPP 3HQJA 4UY8S 1JJ2Q 2ZJRP 1KD1S 5GAGT 1F7TA 5HL7P 5DM7P 3I56R 4MRTA 1YJWR 1VQ8R 2WASB 2ZJPP 5MLCU 1VQ6R 3OW2Q 1QVFQ 2WDOA 5JVGP 2QEXR 2OTJR
chains in the Genus database with same CATH topology
1F7LA 2JCAA 2WASA 4HC6A 5CMOA 3QMNA 3GWMA 2WDSA 2C43A 1F80A 4DXEA 3HQJA 2QG8A 3NE1A 3NE3B 4JM7A 5CXDA 1F7TA 3H7QA 2BDDA 2WDYA 2WATA 2BYDA 3HYKA 1FTHA 1FTFA 4MRTA 1FTEA 2WASB 3NFDA 2JBZA 1QR0A 3NE9A 2WDOA 2CG5A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1F7L A;  2JCA A;  2WAS A;  4HC6 A;  5CMO A;  3QMN A;  3GWM A;  2WDS A;  2C43 A;  1F80 A;  4DXE A;  3HQJ A;  2QG8 A;  3NE1 A;  3NE3 B;  4JM7 A;  5CXD A;  1F7T A;  3H7Q A;  2BDD A;  2WDY A;  2WAT A;  2BYD A;  3HYK A;  1FTH A;  1FTF A;  4MRT A;  1FTE A;  2WAS B;  3NFD A;  2JBZ A;  1QR0 A;  3NE9 A;  2WDO A;  2CG5 A; 
#chains in the Genus database with same CATH topology
 1VQL R;  5GAH T;  3CCS R;  1YJ9 R;  1YIJ R;  1VQ7 R;  1VQM R;  2QG8 A;  3NE1 A;  3NE3 B;  2BYD A;  4IO9 P;  3CCE R;  1S72 R;  3CCQ R;  1FTF A;  1N8R S;  3CME R;  1NJI S;  1YHQ R;  1VQ4 R;  1KC8 S;  2D0O A;  3CMA R;  5DM6 P;  3CC7 R;  3CCR R;  1YIT R;  2JCA A;  2OTL R;  5CMO A;  1M1K S;  3CCM R;  3CC4 R;  2QA4 R;  2C43 A;  1BXE A;  2WDS A;  1VQK R;  4DXE A;  1Q7Y S;  3PIO P;  1M90 S;  1Q81 S;  4IOA P;  2WDY A;  1YJN R;  3HYK A;  4U67 P;  1QVG Q;  1FTE A;  4V19 W;  5JVH P;  1K9M S;  2JBZ A;  4WF9 P;  3CPW Q;  4WFB P;  3NE9 A;  1VQN R;  3G71 R;  1VQ9 R;  1K73 S;  1F7L A;  3J7Z S;  3CF5 P;  4HC6 A;  5H1S U;  3J7Y T;  1VQ5 R;  3I55 R;  1F80 A;  3DLL P;  4JM7 A;  5CXD A;  4IOC P;  3H7Q A;  2BDD A;  2WAT A;  3G4S R;  2ZJQ P;  1FTH A;  3CCU R;  1W2B Q;  1I4J A;  4WFN P;  3CCJ R;  1KQS Q;  1YI2 R;  3NFD A;  4WFA P;  1Q86 S;  3CCV R;  1VQP R;  3CC2 R;  1QR0 A;  5GAD T;  3CCL R;  3CD6 R;  1NBW A;  1VQO R;  4WCE P;  2CG5 A;  3G6E R;  1K8A S;  2WAS A;  5GAE T;  3CXC Q;  3QMN A;  2D0P A;  1Q82 S;  3GWM A;  3PIP P;  3HQJ A;  4UY8 S;  1JJ2 Q;  2ZJR P;  1KD1 S;  5GAG T;  1F7T A;  5HL7 P;  5DM7 P;  3I56 R;  4MRT A;  1YJW R;  1VQ8 R;  2WAS B;  2ZJP P;  5MLC U;  1VQ6 R;  3OW2 Q;  1QVF Q;  2WDO A;  5JVG P;  2QEX R;  2OTJ R; 
#chains in the Genus database with same CATH homology
 1F7L A;  2JCA A;  2WAS A;  4HC6 A;  5CMO A;  3QMN A;  3GWM A;  2WDS A;  2C43 A;  1F80 A;  4DXE A;  3HQJ A;  2QG8 A;  3NE1 A;  3NE3 B;  4JM7 A;  5CXD A;  1F7T A;  3H7Q A;  2BDD A;  2WDY A;  2WAT A;  2BYD A;  3HYK A;  1FTH A;  1FTF A;  4MRT A;  1FTE A;  2WAS B;  3NFD A;  2JBZ A;  1QR0 A;  3NE9 A;  2WDO A;  2CG5 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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