3CD6 | Genus

Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	37
sequence length	150
structure length	150
Chain Sequence	GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 150 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. pubmed doi rcsb
molecule keywords	50S ribosomal protein L2P
total genus	37
structure length	150
sequence length	150
ec nomenclature
pdb deposition date	2008-02-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
R	PF00237	Ribosomal_L22	Ribosomal protein L22p/L17e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.470.10	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22; Chain A	Ribosomal protein L22/L17	3cd6R00

4WFBP 5JVHP 1VQ4R 5GADT 1VQNR 4IOAP 3CXCQ 3CCQR 3CCJR 3CC7R 1JJ2Q 1VQ7R 1K8AS 3DLLP 4V19W 5GAET 1VQ8R 1I4JA 1BXEA 5GAGT 5JVGP 2OTJR 2QA4R 1Q7YS 5DM6P 1KQSQ 1M90S 4WFAP 3PIPP 3G71R 3CCRR 3PIOP 1YIJR 1KD1S 1VQKR 3CMER 4IO9P 1VQOR 3CCER 4UY8S 1VQ9R 4WCEP 3CC4R 1N8RS 2ZJQP 3CCUR 1VQ5R 5H1SU 3CCSR 2ZJRP 1VQ6R 4WF9P 3CCMR 1M1KS 3I55R 1QVGQ 3CPWQ 2OTLR 1Q81S 2ZJPP 2QEXR 3J7ZS 4U67P 1YI2R 5HL7P 3CD6R 1YJWR 1S72R 3CCVR 1VQMR 1YITR 5DM7P 3I56R 4IOCP 1VQLR 1W2BQ 3J7YT 1YJNR 3CF5P 4WFNP 1Q86S 5GAHT 1K9MS 1NJIS 3OW2Q 1K73S 3CCLR 1YHQR 3G6ER 3CC2R 3CMAR 3G4SR 1VQPR 5MLCU 1Q82S 1YJ9R 1QVFQ 1KC8S
chains in the Genus database with same CATH superfamily

1F80A 3QMNA 4WFBP 5JVHP 1VQ4R 2WATA 5GADT 1VQNR 1F7LA 4IOAP 3CXCQ 3CCQR 3CCJR 3CC7R 1JJ2Q 1VQ7R 1NBWA 1KC8S 1K8AS 3DLLP 4V19W 5GAET 1VQ8R 1I4JA 1BXEA 5GAGT 5JVGP 2OTJR 2QA4R 1Q7YS 5DM6P 1KQSQ 2JBZA 1M90S 4WFAP 3PIPP 3G71R 3CCRR 3PIOP 1YIJR 1KD1S 1VQKR 2WDYA 3CMER 5CMOA 2D0OA 4IO9P 1VQOR 3CCER 4UY8S 2BYDA 2WDSA 1VQ9R 4WCEP 3CC4R 3NE9A 3H7QA 1N8RS 4MRTA 2ZJQP 3CCUR 1VQ5R 3CCSR 5H1SU 2ZJRP 1FTHA 1VQ6R 4WF9P 3CCMR 2QG8A 1M1KS 4HC6A 3I55R 1QVGQ 3CPWQ 2OTLR 1Q81S 2ZJPP 2D0PA 3J7ZS 2QEXR 4U67P 1YI2R 5HL7P 3NE3B 3CD6R 2WDOA 1YJWR 2C43A 1S72R 3CCVR 1VQMR 1YITR 5DM7P 1QR0A 3I56R 4IOCP 1VQLR 1W2BQ 2CG5A 2WASA 3J7YT 1YJNR 3CF5P 4WFNP 1Q86S 2JCAA 5GAHT 1K9MS 1FTFA 1NJIS 2WASB 3GWMA 3HQJA 4JM7A 1FTEA 3NE1A 3OW2Q 3NFDA 4DXEA 1K73S 3CCLR 1YHQR 3G6ER 3CC2R 5CXDA 3CMAR 3G4SR 1VQPR 3HYKA 1F7TA 5MLCU 1Q82S 1YJ9R 1QVFQ 2BDDA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4WFB P;  5JVH P;  1VQ4 R;  5GAD T;  1VQN R;  4IOA P;  3CXC Q;  3CCQ R;  3CCJ R;  3CC7 R;  1JJ2 Q;  1VQ7 R;  1K8A S;  3DLL P;  4V19 W;  5GAE T;  1VQ8 R;  1I4J A;  1BXE A;  5GAG T;  5JVG P;  2OTJ R;  2QA4 R;  1Q7Y S;  5DM6 P;  1KQS Q;  1M90 S;  4WFA P;  3PIP P;  3G71 R;  3CCR R;  3PIO P;  1YIJ R;  1KD1 S;  1VQK R;  3CME R;  4IO9 P;  1VQO R;  3CCE R;  4UY8 S;  1VQ9 R;  4WCE P;  3CC4 R;  1N8R S;  2ZJQ P;  3CCU R;  1VQ5 R;  5H1S U;  3CCS R;  2ZJR P;  1VQ6 R;  4WF9 P;  3CCM R;  1M1K S;  3I55 R;  1QVG Q;  3CPW Q;  2OTL R;  1Q81 S;  2ZJP P;  2QEX R;  3J7Z S;  4U67 P;  1YI2 R;  5HL7 P;  3CD6 R;  1YJW R;  1S72 R;  3CCV R;  1VQM R;  1YIT R;  5DM7 P;  3I56 R;  4IOC P;  1VQL R;  1W2B Q;  3J7Y T;  1YJN R;  3CF5 P;  4WFN P;  1Q86 S;  5GAH T;  1K9M S;  1NJI S;  3OW2 Q;  1K73 S;  3CCL R;  1YHQ R;  3G6E R;  3CC2 R;  3CMA R;  3G4S R;  1VQP R;  5MLC U;  1Q82 S;  1YJ9 R;  1QVF Q;  1KC8 S; 
#chains in the Genus database with same CATH topology
 1F80 A;  3QMN A;  4WFB P;  5JVH P;  1VQ4 R;  2WAT A;  5GAD T;  1VQN R;  1F7L A;  4IOA P;  3CXC Q;  3CCQ R;  3CCJ R;  3CC7 R;  1JJ2 Q;  1VQ7 R;  1NBW A;  1KC8 S;  1K8A S;  3DLL P;  4V19 W;  5GAE T;  1VQ8 R;  1I4J A;  1BXE A;  5GAG T;  5JVG P;  2OTJ R;  2QA4 R;  1Q7Y S;  5DM6 P;  1KQS Q;  2JBZ A;  1M90 S;  4WFA P;  3PIP P;  3G71 R;  3CCR R;  3PIO P;  1YIJ R;  1KD1 S;  1VQK R;  2WDY A;  3CME R;  5CMO A;  2D0O A;  4IO9 P;  1VQO R;  3CCE R;  4UY8 S;  2BYD A;  2WDS A;  1VQ9 R;  4WCE P;  3CC4 R;  3NE9 A;  3H7Q A;  1N8R S;  4MRT A;  2ZJQ P;  3CCU R;  1VQ5 R;  3CCS R;  5H1S U;  2ZJR P;  1FTH A;  1VQ6 R;  4WF9 P;  3CCM R;  2QG8 A;  1M1K S;  4HC6 A;  3I55 R;  1QVG Q;  3CPW Q;  2OTL R;  1Q81 S;  2ZJP P;  2D0P A;  3J7Z S;  2QEX R;  4U67 P;  1YI2 R;  5HL7 P;  3NE3 B;  3CD6 R;  2WDO A;  1YJW R;  2C43 A;  1S72 R;  3CCV R;  1VQM R;  1YIT R;  5DM7 P;  1QR0 A;  3I56 R;  4IOC P;  1VQL R;  1W2B Q;  2CG5 A;  2WAS A;  3J7Y T;  1YJN R;  3CF5 P;  4WFN P;  1Q86 S;  2JCA A;  5GAH T;  1K9M S;  1FTF A;  1NJI S;  2WAS B;  3GWM A;  3HQJ A;  4JM7 A;  1FTE A;  3NE1 A;  3OW2 Q;  3NFD A;  4DXE A;  1K73 S;  3CCL R;  1YHQ R;  3G6E R;  3CC2 R;  5CXD A;  3CMA R;  3G4S R;  1VQP R;  3HYK A;  1F7T A;  5MLC U;  1Q82 S;  1YJ9 R;  1QVF Q;  2BDD A; 
#chains in the Genus database with same CATH homology
 4WFB P;  5JVH P;  1VQ4 R;  5GAD T;  1VQN R;  4IOA P;  3CXC Q;  3CCQ R;  3CCJ R;  3CC7 R;  1JJ2 Q;  1VQ7 R;  1K8A S;  3DLL P;  4V19 W;  5GAE T;  1VQ8 R;  1I4J A;  1BXE A;  5GAG T;  5JVG P;  2OTJ R;  2QA4 R;  1Q7Y S;  5DM6 P;  1KQS Q;  1M90 S;  4WFA P;  3PIP P;  3G71 R;  3CCR R;  3PIO P;  1YIJ R;  1KD1 S;  1VQK R;  3CME R;  4IO9 P;  1VQO R;  3CCE R;  4UY8 S;  1VQ9 R;  4WCE P;  3CC4 R;  1N8R S;  2ZJQ P;  3CCU R;  1VQ5 R;  5H1S U;  3CCS R;  2ZJR P;  1VQ6 R;  4WF9 P;  3CCM R;  1M1K S;  3I55 R;  1QVG Q;  3CPW Q;  2OTL R;  1Q81 S;  2ZJP P;  2QEX R;  3J7Z S;  4U67 P;  1YI2 R;  5HL7 P;  3CD6 R;  1YJW R;  1S72 R;  3CCV R;  1VQM R;  1YIT R;  5DM7 P;  3I56 R;  4IOC P;  1VQL R;  1W2B Q;  3J7Y T;  1YJN R;  3CF5 P;  4WFN P;  1Q86 S;  5GAH T;  1K9M S;  1NJI S;  3OW2 Q;  1K73 S;  3CCL R;  1YHQ R;  3G6E R;  3CC2 R;  3CMA R;  3G4S R;  1VQP R;  5MLC U;  1Q82 S;  1YJ9 R;  1QVF Q;  1KC8 S;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3CD6R

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations