3CMAR

The structure of cca and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
150
structure length
150
Chain Sequence
GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS1 (13-22)TI1 (9-12)AH3 (82-102)AH1 (25-35)TI2 (59-62)TII1 (35-38)S2 (38-39)S5 (110-122)3H1 (106-108)AH2 (40-52)TI3 (69-72)TVIII1 (53-56)S3 (57-58)S4 (78-79)TII3 (72-75)TII2 (63-66)TIV3 (60-63)O1 (80-82)S8 (138-148)S6 (125-128)S7 (132-135)Updating...
connected with : NaN
molecule tags Ribosome
publication title Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 37
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2008-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 3cmaR00
3CMER 2OTLR 3CCVR 3CCMR 1VQOR 3DLLP 5H1SU 2QA4R 4WFNP 3OW2Q 1K73S 1NJIS 2OTJR 3J7YT 4IO9P 1K9MS 3CF5P 4UY8S 5JVGP 1YI2R 3PIPP 3CC7R 1Q82S 1I4JA 1S72R 4WFAP 2ZJRP 1KC8S 1VQPR 5JVHP 5DM7P 4WFBP 1M1KS 3CXCQ 3CCSR 5MLCU 3CCQR 1YJWR 1VQMR 1YJ9R 3CCRR 4IOAP 3G71R 2QEXR 1JJ2Q 1YJNR 5GAHT 3J7ZS 1Q81S 1VQ5R 1Q86S 5HL7P 4IOCP 3CPWQ 5DM6P 1KQSQ 1VQ6R 1VQ4R 1VQNR 2ZJQP 1VQ9R 4WF9P 1QVGQ 3PIOP 3I56R 1VQ8R 1YIJR 1Q7YS 1VQLR 1W2BQ 5GADT 3CCER 1VQKR 1K8AS 3CC2R 2ZJPP 3I55R 3CC4R 1N8RS 3CMAR 4WCEP 4V19W 3G6ER 4U67P 1VQ7R 3CCJR 1QVFQ 1BXEA 3G4SR 1YHQR 3CD6R 1KD1S 3CCLR 3CCUR 1M90S 5GAET 5GAGT 1YITR
chains in the Genus database with same CATH superfamily
3CMER 2OTLR 3CCVR 3CCMR 1VQOR 3DLLP 5H1SU 2QA4R 4WFNP 3OW2Q 4MRTA 1K73S 5CMOA 3NE9A 1NJIS 2OTJR 1QR0A 2WDSA 3J7YT 4IO9P 1K9MS 3CF5P 4UY8S 5JVGP 2D0OA 3QMNA 1YI2R 3PIPP 3CC7R 1Q82S 1I4JA 1FTEA 1S72R 4WFAP 2ZJRP 1KC8S 1VQPR 2WDYA 5JVHP 1F7LA 5DM7P 4WFBP 1M1KS 3NE1A 3CXCQ 3CCSR 1F80A 2C43A 5MLCU 3CCQR 1YJWR 1VQMR 1YJ9R 3CCRR 4IOAP 3G71R 3HYKA 4JM7A 2QEXR 1JJ2Q 1YJNR 5GAHT 3J7ZS 3NE3B 1Q81S 1VQ5R 1Q86S 3H7QA 5HL7P 4IOCP 2D0PA 3CPWQ 5DM6P 1KQSQ 1VQ6R 1VQ4R 2JBZA 5CXDA 1VQNR 2ZJQP 1FTFA 4HC6A 1VQ9R 4WF9P 1QVGQ 3PIOP 2QG8A 3I56R 3GWMA 1VQ8R 2WASB 1YIJR 3NFDA 1Q7YS 1W2BQ 2CG5A 5GADT 1VQKR 1VQLR 2BDDA 3CCER 1K8AS 3CC2R 2ZJPP 1FTHA 3HQJA 1F7TA 3I55R 2WASA 2WDOA 3CC4R 1N8RS 3CMAR 4WCEP 4V19W 3G6ER 4U67P 1VQ7R 2BYDA 1NBWA 3CCJR 2WATA 1QVFQ 1BXEA 3G4SR 1YHQR 3CD6R 1KD1S 3CCLR 4DXEA 3CCUR 1M90S 5GAET 5GAGT 2JCAA 1YITR
chains in the Genus database with same CATH topology
3CMER 2OTLR 3CCVR 3CCMR 1VQOR 3DLLP 5H1SU 2QA4R 4WFNP 3OW2Q 1K73S 1NJIS 2OTJR 3J7YT 4IO9P 1K9MS 3CF5P 4UY8S 5JVGP 1YI2R 3PIPP 3CC7R 1Q82S 1I4JA 1S72R 4WFAP 2ZJRP 1KC8S 1VQPR 5JVHP 5DM7P 4WFBP 1M1KS 3CXCQ 3CCSR 5MLCU 3CCQR 1YJWR 1VQMR 1YJ9R 3CCRR 4IOAP 3G71R 2QEXR 1JJ2Q 1YJNR 5GAHT 3J7ZS 1Q81S 1VQ5R 1Q86S 5HL7P 4IOCP 3CPWQ 5DM6P 1KQSQ 1VQ6R 1VQ4R 1VQNR 2ZJQP 1VQ9R 4WF9P 1QVGQ 3PIOP 3I56R 1VQ8R 1YIJR 1Q7YS 1VQLR 1W2BQ 5GADT 3CCER 1VQKR 1K8AS 3CC2R 2ZJPP 3I55R 3CC4R 1N8RS 3CMAR 4WCEP 4V19W 3G6ER 4U67P 1VQ7R 3CCJR 1QVFQ 1BXEA 3G4SR 1YHQR 3CD6R 1KD1S 3CCLR 3CCUR 1M90S 5GAET 5GAGT 1YITR
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3CME R;  2OTL R;  3CCV R;  3CCM R;  1VQO R;  3DLL P;  5H1S U;  2QA4 R;  4WFN P;  3OW2 Q;  1K73 S;  1NJI S;  2OTJ R;  3J7Y T;  4IO9 P;  1K9M S;  3CF5 P;  4UY8 S;  5JVG P;  1YI2 R;  3PIP P;  3CC7 R;  1Q82 S;  1I4J A;  1S72 R;  4WFA P;  2ZJR P;  1KC8 S;  1VQP R;  5JVH P;  5DM7 P;  4WFB P;  1M1K S;  3CXC Q;  3CCS R;  5MLC U;  3CCQ R;  1YJW R;  1VQM R;  1YJ9 R;  3CCR R;  4IOA P;  3G71 R;  2QEX R;  1JJ2 Q;  1YJN R;  5GAH T;  3J7Z S;  1Q81 S;  1VQ5 R;  1Q86 S;  5HL7 P;  4IOC P;  3CPW Q;  5DM6 P;  1KQS Q;  1VQ6 R;  1VQ4 R;  1VQN R;  2ZJQ P;  1VQ9 R;  4WF9 P;  1QVG Q;  3PIO P;  3I56 R;  1VQ8 R;  1YIJ R;  1Q7Y S;  1VQL R;  1W2B Q;  5GAD T;  3CCE R;  1VQK R;  1K8A S;  3CC2 R;  2ZJP P;  3I55 R;  3CC4 R;  1N8R S;  3CMA R;  4WCE P;  4V19 W;  3G6E R;  4U67 P;  1VQ7 R;  3CCJ R;  1QVF Q;  1BXE A;  3G4S R;  1YHQ R;  3CD6 R;  1KD1 S;  3CCL R;  3CCU R;  1M90 S;  5GAE T;  5GAG T;  1YIT R; 
#chains in the Genus database with same CATH topology
 3CME R;  2OTL R;  3CCV R;  3CCM R;  1VQO R;  3DLL P;  5H1S U;  2QA4 R;  4WFN P;  3OW2 Q;  4MRT A;  1K73 S;  5CMO A;  3NE9 A;  1NJI S;  2OTJ R;  1QR0 A;  2WDS A;  3J7Y T;  4IO9 P;  1K9M S;  3CF5 P;  4UY8 S;  5JVG P;  2D0O A;  3QMN A;  1YI2 R;  3PIP P;  3CC7 R;  1Q82 S;  1I4J A;  1FTE A;  1S72 R;  4WFA P;  2ZJR P;  1KC8 S;  1VQP R;  2WDY A;  5JVH P;  1F7L A;  5DM7 P;  4WFB P;  1M1K S;  3NE1 A;  3CXC Q;  3CCS R;  1F80 A;  2C43 A;  5MLC U;  3CCQ R;  1YJW R;  1VQM R;  1YJ9 R;  3CCR R;  4IOA P;  3G71 R;  3HYK A;  4JM7 A;  2QEX R;  1JJ2 Q;  1YJN R;  5GAH T;  3J7Z S;  3NE3 B;  1Q81 S;  1VQ5 R;  1Q86 S;  3H7Q A;  5HL7 P;  4IOC P;  2D0P A;  3CPW Q;  5DM6 P;  1KQS Q;  1VQ6 R;  1VQ4 R;  2JBZ A;  5CXD A;  1VQN R;  2ZJQ P;  1FTF A;  4HC6 A;  1VQ9 R;  4WF9 P;  1QVG Q;  3PIO P;  2QG8 A;  3I56 R;  3GWM A;  1VQ8 R;  2WAS B;  1YIJ R;  3NFD A;  1Q7Y S;  1W2B Q;  2CG5 A;  5GAD T;  1VQK R;  1VQL R;  2BDD A;  3CCE R;  1K8A S;  3CC2 R;  2ZJP P;  1FTH A;  3HQJ A;  1F7T A;  3I55 R;  2WAS A;  2WDO A;  3CC4 R;  1N8R S;  3CMA R;  4WCE P;  4V19 W;  3G6E R;  4U67 P;  1VQ7 R;  2BYD A;  1NBW A;  3CCJ R;  2WAT A;  1QVF Q;  1BXE A;  3G4S R;  1YHQ R;  3CD6 R;  1KD1 S;  3CCL R;  4DXE A;  3CCU R;  1M90 S;  5GAE T;  5GAG T;  2JCA A;  1YIT R; 
#chains in the Genus database with same CATH homology
 3CME R;  2OTL R;  3CCV R;  3CCM R;  1VQO R;  3DLL P;  5H1S U;  2QA4 R;  4WFN P;  3OW2 Q;  1K73 S;  1NJI S;  2OTJ R;  3J7Y T;  4IO9 P;  1K9M S;  3CF5 P;  4UY8 S;  5JVG P;  1YI2 R;  3PIP P;  3CC7 R;  1Q82 S;  1I4J A;  1S72 R;  4WFA P;  2ZJR P;  1KC8 S;  1VQP R;  5JVH P;  5DM7 P;  4WFB P;  1M1K S;  3CXC Q;  3CCS R;  5MLC U;  3CCQ R;  1YJW R;  1VQM R;  1YJ9 R;  3CCR R;  4IOA P;  3G71 R;  2QEX R;  1JJ2 Q;  1YJN R;  5GAH T;  3J7Z S;  1Q81 S;  1VQ5 R;  1Q86 S;  5HL7 P;  4IOC P;  3CPW Q;  5DM6 P;  1KQS Q;  1VQ6 R;  1VQ4 R;  1VQN R;  2ZJQ P;  1VQ9 R;  4WF9 P;  1QVG Q;  3PIO P;  3I56 R;  1VQ8 R;  1YIJ R;  1Q7Y S;  1VQL R;  1W2B Q;  5GAD T;  3CCE R;  1VQK R;  1K8A S;  3CC2 R;  2ZJP P;  3I55 R;  3CC4 R;  1N8R S;  3CMA R;  4WCE P;  4V19 W;  3G6E R;  4U67 P;  1VQ7 R;  3CCJ R;  1QVF Q;  1BXE A;  3G4S R;  1YHQ R;  3CD6 R;  1KD1 S;  3CCL R;  3CCU R;  1M90 S;  5GAE T;  5GAG T;  1YIT R;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.