4JM7A

1.82 angstrom resolution crystal structure of holo-(acyl-carrier-protein) synthase (acps) from staphylococcus aureus
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
130
structure length
122
Chain Sequence
DLGTENLYFQSNAMIHGIGVDLIEIDRIQALYSKQPKLVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGVAFNDIDCYNDGKPKIDYEGFIVHVSISHTEHYAMSQVVLEKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural characterization and comparison of three acyl-carrier-protein synthases from pathogenic bacteria.
pubmed doi rcsb
molecule tags Transferase
source organism Staphylococcus aureus
molecule keywords Holo-[acyl-carrier-protein] synthase
total genus 37
structure length 122
sequence length 130
chains with identical sequence B, C
ec nomenclature ec 2.7.8.7: Holo-[acyl-carrier-protein] synthase.
pdb deposition date 2013-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01648 ACPS 4'-phosphopantetheinyl transferase superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.20 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A 4'-phosphopantetheinyl transferase domain 4jm7A01
3NFDA 1FTHA 3GWMA 3HYKA 2WATA 3HQJA 2BDDA 3NE1A 2JBZA 2WASB 2BYDA 2WDSA 3QMNA 5CMOA 2QG8A 2C43A 2CG5A 1FTFA 2JCAA 3H7QA 1F7LA 4JM7A 4MRTA 1F7TA 1FTEA 1QR0A 4DXEA 2WASA 3NE9A 4HC6A 3NE3B 2WDOA 5CXDA 1F80A 2WDYA
chains in the Genus database with same CATH superfamily
3J7YT 3NFDA 1FTHA 3CCQR 1YJWR 3HQJA 5DM6P 3I55R 2BDDA 3NE1A 3OW2Q 2WASB 3CD6R 3PIPP 5MLCU 3CMER 3CPWQ 1YI2R 3I56R 1YJNR 5GAHT 3QMNA 5CMOA 3J7ZS 3CCUR 1VQMR 1VQNR 2C43A 2D0OA 3CMAR 1VQ7R 4JM7A 5GADT 3CC2R 3G6ER 5JVGP 1JJ2Q 5JVHP 5HL7P 4WFBP 3NE3B 1F80A 5GAET 3GWMA 3CC4R 3HYKA 1NBWA 1YHQR 3G71R 3CCVR 1NJIS 1I4JA 1YJ9R 3CCER 1BXEA 1VQKR 3CCRR 2BYDA 2WDSA 1VQOR 2CG5A 4WFAP 3CCMR 1K9MS 3H7QA 4WCEP 3CXCQ 4MRTA 1M90S 1YIJR 2OTLR 1FTEA 4WFNP 1VQ4R 3NE9A 2ZJQP 4UY8S 5DM7P 4IOCP 5CXDA 2WDYA 1KD1S 2WATA 1KQSQ 1VQLR 2D0PA 3DLLP 1VQ8R 1Q86S 3CC7R 2QEXR 1Q7YS 2JCAA 1VQPR 1F7LA 2ZJRP 1K73S 4IOAP 1F7TA 1VQ6R 1QVGQ 1QVFQ 1QR0A 4DXEA 4V19W 2WDOA 3CCJR 1VQ5R 4U67P 1S72R 1Q81S 4WF9P 1VQ9R 2JBZA 3PIOP 3G4SR 4IO9P 2OTJR 5H1SU 2ZJPP 2QG8A 1FTFA 1Q82S 3CCSR 1N8RS 2QA4R 3CCLR 1KC8S 5GAGT 3CF5P 1W2BQ 2WASA 1K8AS 1YITR 4HC6A 1M1KS
chains in the Genus database with same CATH topology
3NFDA 1FTHA 3GWMA 3HYKA 2WATA 3HQJA 2BDDA 3NE1A 2JBZA 2WASB 2BYDA 2WDSA 3QMNA 5CMOA 2QG8A 2C43A 2CG5A 1FTFA 2JCAA 3H7QA 1F7LA 4JM7A 4MRTA 1F7TA 1FTEA 1QR0A 4DXEA 2WASA 3NE9A 4HC6A 3NE3B 2WDOA 5CXDA 1F80A 2WDYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NFD A;  1FTH A;  3GWM A;  3HYK A;  2WAT A;  3HQJ A;  2BDD A;  3NE1 A;  2JBZ A;  2WAS B;  2BYD A;  2WDS A;  3QMN A;  5CMO A;  2QG8 A;  2C43 A;  2CG5 A;  1FTF A;  2JCA A;  3H7Q A;  1F7L A;  4JM7 A;  4MRT A;  1F7T A;  1FTE A;  1QR0 A;  4DXE A;  2WAS A;  3NE9 A;  4HC6 A;  3NE3 B;  2WDO A;  5CXD A;  1F80 A;  2WDY A; 
#chains in the Genus database with same CATH topology
 3J7Y T;  3NFD A;  1FTH A;  3CCQ R;  1YJW R;  3HQJ A;  5DM6 P;  3I55 R;  2BDD A;  3NE1 A;  3OW2 Q;  2WAS B;  3CD6 R;  3PIP P;  5MLC U;  3CME R;  3CPW Q;  1YI2 R;  3I56 R;  1YJN R;  5GAH T;  3QMN A;  5CMO A;  3J7Z S;  3CCU R;  1VQM R;  1VQN R;  2C43 A;  2D0O A;  3CMA R;  1VQ7 R;  4JM7 A;  5GAD T;  3CC2 R;  3G6E R;  5JVG P;  1JJ2 Q;  5JVH P;  5HL7 P;  4WFB P;  3NE3 B;  1F80 A;  5GAE T;  3GWM A;  3CC4 R;  3HYK A;  1NBW A;  1YHQ R;  3G71 R;  3CCV R;  1NJI S;  1I4J A;  1YJ9 R;  3CCE R;  1BXE A;  1VQK R;  3CCR R;  2BYD A;  2WDS A;  1VQO R;  2CG5 A;  4WFA P;  3CCM R;  1K9M S;  3H7Q A;  4WCE P;  3CXC Q;  4MRT A;  1M90 S;  1YIJ R;  2OTL R;  1FTE A;  4WFN P;  1VQ4 R;  3NE9 A;  2ZJQ P;  4UY8 S;  5DM7 P;  4IOC P;  5CXD A;  2WDY A;  1KD1 S;  2WAT A;  1KQS Q;  1VQL R;  2D0P A;  3DLL P;  1VQ8 R;  1Q86 S;  3CC7 R;  2QEX R;  1Q7Y S;  2JCA A;  1VQP R;  1F7L A;  2ZJR P;  1K73 S;  4IOA P;  1F7T A;  1VQ6 R;  1QVG Q;  1QVF Q;  1QR0 A;  4DXE A;  4V19 W;  2WDO A;  3CCJ R;  1VQ5 R;  4U67 P;  1S72 R;  1Q81 S;  4WF9 P;  1VQ9 R;  2JBZ A;  3PIO P;  3G4S R;  4IO9 P;  2OTJ R;  5H1S U;  2ZJP P;  2QG8 A;  1FTF A;  1Q82 S;  3CCS R;  1N8R S;  2QA4 R;  3CCL R;  1KC8 S;  5GAG T;  3CF5 P;  1W2B Q;  2WAS A;  1K8A S;  1YIT R;  4HC6 A;  1M1K S; 
#chains in the Genus database with same CATH homology
 3NFD A;  1FTH A;  3GWM A;  3HYK A;  2WAT A;  3HQJ A;  2BDD A;  3NE1 A;  2JBZ A;  2WAS B;  2BYD A;  2WDS A;  3QMN A;  5CMO A;  2QG8 A;  2C43 A;  2CG5 A;  1FTF A;  2JCA A;  3H7Q A;  1F7L A;  4JM7 A;  4MRT A;  1F7T A;  1FTE A;  1QR0 A;  4DXE A;  2WAS A;  3NE9 A;  4HC6 A;  3NE3 B;  2WDO A;  5CXD A;  1F80 A;  2WDY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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