4V19 | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	166
structure length	166
Chain Sequence	ISRKWEKKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFSDKKGAQIIKEVLLEAQDMAVRDHNVEFRSNLYVAESTSGRGQYLKRIRYHGRGRFGIMEKVFCHYFVKLVEGPPPPREAPKTAVAHAREYIQELRNRTITHAL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 166 atoms

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166 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	The Complete Structure of the Large Subunit of the Mammalian Mitochondrial Ribosome pubmed doi rcsb
molecule keywords	MITORIBOSOMAL PROTEIN BL27M, MRPL27
total genus	34
structure length	166
sequence length	166
ec nomenclature
pdb deposition date	2014-09-25

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.470.10	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22; Chain A	Ribosomal protein L22/L17	4v19W00

1JJ2Q 1S72R 5DM7P 5DM6P 4WFAP 3PIOP 3CCJR 1KC8S 3CCVR 1KQSQ 3CCER 3CXCQ 1BXEA 4WFBP 3PIPP 3CC2R 3CCSR 1KD1S 5HL7P 4WF9P 1VQPR 1VQ8R 5H1SU 4WCEP 1Q86S 3G71R 4WFNP 3CC7R 1NJIS 2OTLR 4IOAP 3CCMR 1VQ6R 4IO9P 1Q7YS 3I56R 1Q81S 1M1KS 2OTJR 3CMAR 3CCQR 2QA4R 3CPWQ 2ZJRP 4IOCP 1N8RS 1K9MS 1QVGQ 5JVGP 3G4SR 1VQ9R 1K73S 3CMER 3CCLR 3CCUR 5MLCU 1VQ5R 1VQLR 3J7YT 2ZJQP 1K8AS 3J7ZS 3CC4R 1VQ7R 4U67P 1YI2R 1YITR 4V19W 3OW2Q 2ZJPP 3DLLP 4UY8S 1W2BQ 1VQ4R 1VQNR 1YJNR 1QVFQ 2QEXR 1YJ9R 5JVHP 5GADT 5GAET 3G6ER 1VQMR 3CF5P 1VQKR 1Q82S 3CD6R 3CCRR 1VQOR 1YJWR 1I4JA 3I55R 1YHQR 5GAGT 1M90S 1YIJR 5GAHT
chains in the Genus database with same CATH superfamily

1JJ2Q 1S72R 1NBWA 5DM7P 2QG8A 5DM6P 4WFAP 2WDYA 3PIOP 3NFDA 3CCJR 1KC8S 2C43A 3CCVR 1KQSQ 3CCER 3CXCQ 2BYDA 1BXEA 2WASA 4WFBP 3PIPP 3CC2R 3CCSR 2CG5A 1KD1S 5HL7P 4WF9P 3GWMA 1VQPR 1VQ8R 3NE1A 1FTHA 5H1SU 4WCEP 1Q86S 3G71R 4WFNP 3CC7R 1NJIS 2OTLR 4IOAP 3CCMR 1VQ6R 4IO9P 1Q7YS 3I56R 1Q81S 1M1KS 1F7LA 2OTJR 2D0OA 2D0PA 3CMAR 3CCQR 3NE9A 2QA4R 3NE3B 3CPWQ 2ZJRP 4IOCP 1N8RS 1K9MS 1QVGQ 5JVGP 3G4SR 1VQ9R 1FTFA 1K73S 3CMER 3CCLR 2JBZA 3CCUR 5MLCU 3H7QA 2BDDA 4DXEA 5CXDA 2WDSA 1VQ5R 1VQLR 1FTEA 3J7YT 2ZJQP 3QMNA 1K8AS 3J7ZS 1F80A 3CC4R 1VQ7R 4U67P 1YI2R 1YITR 2WDOA 4V19W 4HC6A 3OW2Q 2ZJPP 5CMOA 3DLLP 4UY8S 1W2BQ 1VQ4R 1VQNR 1YJNR 1QVFQ 2QEXR 1YJ9R 5JVHP 3HQJA 3HYKA 5GADT 5GAET 3G6ER 1VQMR 3CF5P 1VQKR 1Q82S 3CD6R 3CCRR 1F7TA 1VQOR 4JM7A 2WATA 1YJWR 1I4JA 1QR0A 3I55R 1YHQR 5GAGT 4MRTA 2WASB 1M90S 2JCAA 1YIJR 5GAHT
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1JJ2 Q;  1S72 R;  5DM7 P;  5DM6 P;  4WFA P;  3PIO P;  3CCJ R;  1KC8 S;  3CCV R;  1KQS Q;  3CCE R;  3CXC Q;  1BXE A;  4WFB P;  3PIP P;  3CC2 R;  3CCS R;  1KD1 S;  5HL7 P;  4WF9 P;  1VQP R;  1VQ8 R;  5H1S U;  4WCE P;  1Q86 S;  3G71 R;  4WFN P;  3CC7 R;  1NJI S;  2OTL R;  4IOA P;  3CCM R;  1VQ6 R;  4IO9 P;  1Q7Y S;  3I56 R;  1Q81 S;  1M1K S;  2OTJ R;  3CMA R;  3CCQ R;  2QA4 R;  3CPW Q;  2ZJR P;  4IOC P;  1N8R S;  1K9M S;  1QVG Q;  5JVG P;  3G4S R;  1VQ9 R;  1K73 S;  3CME R;  3CCL R;  3CCU R;  5MLC U;  1VQ5 R;  1VQL R;  3J7Y T;  2ZJQ P;  1K8A S;  3J7Z S;  3CC4 R;  1VQ7 R;  4U67 P;  1YI2 R;  1YIT R;  4V19 W;  3OW2 Q;  2ZJP P;  3DLL P;  4UY8 S;  1W2B Q;  1VQ4 R;  1VQN R;  1YJN R;  1QVF Q;  2QEX R;  1YJ9 R;  5JVH P;  5GAD T;  5GAE T;  3G6E R;  1VQM R;  3CF5 P;  1VQK R;  1Q82 S;  3CD6 R;  3CCR R;  1VQO R;  1YJW R;  1I4J A;  3I55 R;  1YHQ R;  5GAG T;  1M90 S;  1YIJ R;  5GAH T; 
#chains in the Genus database with same CATH topology
 1JJ2 Q;  1S72 R;  1NBW A;  5DM7 P;  2QG8 A;  5DM6 P;  4WFA P;  2WDY A;  3PIO P;  3NFD A;  3CCJ R;  1KC8 S;  2C43 A;  3CCV R;  1KQS Q;  3CCE R;  3CXC Q;  2BYD A;  1BXE A;  2WAS A;  4WFB P;  3PIP P;  3CC2 R;  3CCS R;  2CG5 A;  1KD1 S;  5HL7 P;  4WF9 P;  3GWM A;  1VQP R;  1VQ8 R;  3NE1 A;  1FTH A;  5H1S U;  4WCE P;  1Q86 S;  3G71 R;  4WFN P;  3CC7 R;  1NJI S;  2OTL R;  4IOA P;  3CCM R;  1VQ6 R;  4IO9 P;  1Q7Y S;  3I56 R;  1Q81 S;  1M1K S;  1F7L A;  2OTJ R;  2D0O A;  2D0P A;  3CMA R;  3CCQ R;  3NE9 A;  2QA4 R;  3NE3 B;  3CPW Q;  2ZJR P;  4IOC P;  1N8R S;  1K9M S;  1QVG Q;  5JVG P;  3G4S R;  1VQ9 R;  1FTF A;  1K73 S;  3CME R;  3CCL R;  2JBZ A;  3CCU R;  5MLC U;  3H7Q A;  2BDD A;  4DXE A;  5CXD A;  2WDS A;  1VQ5 R;  1VQL R;  1FTE A;  3J7Y T;  2ZJQ P;  3QMN A;  1K8A S;  3J7Z S;  1F80 A;  3CC4 R;  1VQ7 R;  4U67 P;  1YI2 R;  1YIT R;  2WDO A;  4V19 W;  4HC6 A;  3OW2 Q;  2ZJP P;  5CMO A;  3DLL P;  4UY8 S;  1W2B Q;  1VQ4 R;  1VQN R;  1YJN R;  1QVF Q;  2QEX R;  1YJ9 R;  5JVH P;  3HQJ A;  3HYK A;  5GAD T;  5GAE T;  3G6E R;  1VQM R;  3CF5 P;  1VQK R;  1Q82 S;  3CD6 R;  3CCR R;  1F7T A;  1VQO R;  4JM7 A;  2WAT A;  1YJW R;  1I4J A;  1QR0 A;  3I55 R;  1YHQ R;  5GAG T;  4MRT A;  2WAS B;  1M90 S;  2JCA A;  1YIJ R;  5GAH T; 
#chains in the Genus database with same CATH homology
 1JJ2 Q;  1S72 R;  5DM7 P;  5DM6 P;  4WFA P;  3PIO P;  3CCJ R;  1KC8 S;  3CCV R;  1KQS Q;  3CCE R;  3CXC Q;  1BXE A;  4WFB P;  3PIP P;  3CC2 R;  3CCS R;  1KD1 S;  5HL7 P;  4WF9 P;  1VQP R;  1VQ8 R;  5H1S U;  4WCE P;  1Q86 S;  3G71 R;  4WFN P;  3CC7 R;  1NJI S;  2OTL R;  4IOA P;  3CCM R;  1VQ6 R;  4IO9 P;  1Q7Y S;  3I56 R;  1Q81 S;  1M1K S;  2OTJ R;  3CMA R;  3CCQ R;  2QA4 R;  3CPW Q;  2ZJR P;  4IOC P;  1N8R S;  1K9M S;  1QVG Q;  5JVG P;  3G4S R;  1VQ9 R;  1K73 S;  3CME R;  3CCL R;  3CCU R;  5MLC U;  1VQ5 R;  1VQL R;  3J7Y T;  2ZJQ P;  1K8A S;  3J7Z S;  3CC4 R;  1VQ7 R;  4U67 P;  1YI2 R;  1YIT R;  4V19 W;  3OW2 Q;  2ZJP P;  3DLL P;  4UY8 S;  1W2B Q;  1VQ4 R;  1VQN R;  1YJN R;  1QVF Q;  2QEX R;  1YJ9 R;  5JVH P;  5GAD T;  5GAE T;  3G6E R;  1VQM R;  3CF5 P;  1VQK R;  1Q82 S;  3CD6 R;  3CCR R;  1VQO R;  1YJW R;  1I4J A;  3I55 R;  1YHQ R;  5GAG T;  1M90 S;  1YIJ R;  5GAH T;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4V19W

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN