1CTLA

Structure of the carboxy-terminal lim domain from the cysteine rich protein crp
Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
85
structure length
85
Chain Sequence
MAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHSQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (9-11)TI1 (12-15)S4 (29-32)TIV2 (11-14)TIV6 (32-35)EMPTYTIV7 (33-36)TIV8 (38-41)TI2 (46-49)TI3 (59-62)S5 (50-53)S6 (56-59)TIV11 (60-63)TIV13 (62-65)TIV14 (63-66)TIV12 (61-64)TIV15 (64-67)O1 (73-75)S2 (16-18)S3 (23-26)Updating...
connected with : NaN
publication title Structure of the carboxy-terminal LIM domain from the cysteine rich protein CRP.
pubmed doi rcsb
molecule keywords AVIAN CYSTEINE RICH PROTEIN
molecule tags Metal binding protein
source organism Gallus gallus
total genus 5
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 1995-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 1ctlA00
2D8YA 1X64A 2IYBE 2O13A 4JCJA 2YPAC 1B8TA 2EHEA 2CUPA 2CO8A 1X6AA 2MBVA 2CUQA 1QLIA 2CORA 2JTNA 2O10A 2L6ZC 1X4LA 2XJYA 2XQNT 3F6QB 1G47A 2L4ZA 2D8ZA 1M3VA 1X68A 1CXXA 4KFZA 2DARA 1X63A 2DFYC 2D8XA 3IXEB 1CTLA 2XJZA 4HI9B 1A7IA 3MMKA 1IBIA 2DJ7A 2DLOA 1IMLA 1X3HA 2LZUA 4HI8B 1WIGA 1J2OA 1NYPA 2L6YB 1U5SB 1WYHA 1X62A 2CU8A 2MIUA 2CURA 1RUTX 2LXDA 2EGQA 2KBXB 1X61A 1V6GA
chains in the Genus database with same CATH superfamily
2D8YA 2O13A 2CUPA 3NIMA 2CO8A 2MBVA 2JTNA 1G47A 2XJYA 2XQNT 3ZLIA 1CXXA 3ZPOA 2XJZA 5FXWA 4HI8B 3NIKA 1NYPA 1U5SB 3NINA 2CU8A 2MIUA 4EZHA 2CURA 1RUTX 2EGQA 5FY0A 1V6GA 1X64A 5FXZA 1B8TA 5LKTA 3NIJA 1QLIA 4EZ4A 2L4ZA 2D8ZA 1CTLA 2DFYC 5A1LA 3IXEB 3NILA 4HI9B 5FY1A 1J2OA 1WYHA 1X62A 4UF0B 2LXDA 5FXXA 4JCJA 2YPAC 2EHEA 1X6AA 2CUQA 4EYUA 2CORA 2O10A 5FY7A 2L6ZC 1X4LA 3F6QB 4KFZA 1M3VA 1X63A 3NISA 2D8XA 5FYMA 1IBIA 1A7IA 3MMKA 2DJ7A 2DLOA 2L6YB 3AVRA 2XUEA 2IYBE 4ASKA 5LKZA 3AVSA 5FXVA 5LKUA 3NIHA 1X68A 4UF0A 2DARA 4BHWA 5FP3A 1IMLA 1X3HA 2LZUA 5LKXA 1WIGA 2KBXB 1X61A
chains in the Genus database with same CATH topology
2D8YA 2O13A 2CUPA 3NIMA 2CO8A 2MBVA 2JTNA 1G47A 2XJYA 2XQNT 3ZLIA 1CXXA 3ZPOA 2XJZA 5FXWA 4HI8B 3NIKA 1NYPA 1U5SB 3NINA 2CU8A 2MIUA 4EZHA 2CURA 1RUTX 2EGQA 5FY0A 1V6GA 1X64A 5FXZA 1B8TA 5LKTA 3NIJA 1QLIA 4EZ4A 2L4ZA 2D8ZA 1CTLA 2DFYC 5A1LA 3IXEB 3NILA 4HI9B 5FY1A 1J2OA 1WYHA 1X62A 4UF0B 2LXDA 5FXXA 4JCJA 2YPAC 2EHEA 1X6AA 2CUQA 4EYUA 2CORA 2O10A 5FY7A 2L6ZC 1X4LA 3F6QB 4KFZA 1M3VA 1X63A 3NISA 2D8XA 5FYMA 1IBIA 1A7IA 3MMKA 2DJ7A 2DLOA 2L6YB 3AVRA 2XUEA 2IYBE 4ASKA 5LKZA 3AVSA 5FXVA 5LKUA 3NIHA 1X68A 4UF0A 2DARA 4BHWA 5FP3A 1IMLA 1X3HA 2LZUA 5LKXA 1WIGA 2KBXB 1X61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D8Y A;  1X64 A;  2IYB E;  2O13 A;  4JCJ A;  2YPA C;  1B8T A;  2EHE A;  2CUP A;  2CO8 A;  1X6A A;  2MBV A;  2CUQ A;  1QLI A;  2COR A;  2JTN A;  2O10 A;  2L6Z C;  1X4L A;  2XJY A;  2XQN T;  3F6Q B;  1G47 A;  2L4Z A;  2D8Z A;  1M3V A;  1X68 A;  1CXX A;  4KFZ A;  2DAR A;  1X63 A;  2DFY C;  2D8X A;  3IXE B;  1CTL A;  2XJZ A;  4HI9 B;  1A7I A;  3MMK A;  1IBI A;  2DJ7 A;  2DLO A;  1IML A;  1X3H A;  2LZU A;  4HI8 B;  1WIG A;  1J2O A;  1NYP A;  2L6Y B;  1U5S B;  1WYH A;  1X62 A;  2CU8 A;  2MIU A;  2CUR A;  1RUT X;  2LXD A;  2EGQ A;  2KBX B;  1X61 A;  1V6G A; 
#chains in the Genus database with same CATH topology
 2D8Y A;  2O13 A;  2CUP A;  3NIM A;  2CO8 A;  2MBV A;  2JTN A;  1G47 A;  2XJY A;  2XQN T;  3ZLI A;  1CXX A;  3ZPO A;  2XJZ A;  5FXW A;  4HI8 B;  3NIK A;  1NYP A;  1U5S B;  3NIN A;  2CU8 A;  2MIU A;  4EZH A;  2CUR A;  1RUT X;  2EGQ A;  5FY0 A;  1V6G A;  1X64 A;  5FXZ A;  1B8T A;  5LKT A;  3NIJ A;  1QLI A;  4EZ4 A;  2L4Z A;  2D8Z A;  1CTL A;  2DFY C;  5A1L A;  3IXE B;  3NIL A;  4HI9 B;  5FY1 A;  1J2O A;  1WYH A;  1X62 A;  4UF0 B;  2LXD A;  5FXX A;  4JCJ A;  2YPA C;  2EHE A;  1X6A A;  2CUQ A;  4EYU A;  2COR A;  2O10 A;  5FY7 A;  2L6Z C;  1X4L A;  3F6Q B;  4KFZ A;  1M3V A;  1X63 A;  3NIS A;  2D8X A;  5FYM A;  1IBI A;  1A7I A;  3MMK A;  2DJ7 A;  2DLO A;  2L6Y B;  3AVR A;  2XUE A;  2IYB E;  4ASK A;  5LKZ A;  3AVS A;  5FXV A;  5LKU A;  3NIH A;  1X68 A;  4UF0 A;  2DAR A;  4BHW A;  5FP3 A;  1IML A;  1X3H A;  2LZU A;  5LKX A;  1WIG A;  2KBX B;  1X61 A; 
#chains in the Genus database with same CATH homology
 2D8Y A;  2O13 A;  2CUP A;  3NIM A;  2CO8 A;  2MBV A;  2JTN A;  1G47 A;  2XJY A;  2XQN T;  3ZLI A;  1CXX A;  3ZPO A;  2XJZ A;  5FXW A;  4HI8 B;  3NIK A;  1NYP A;  1U5S B;  3NIN A;  2CU8 A;  2MIU A;  4EZH A;  2CUR A;  1RUT X;  2EGQ A;  5FY0 A;  1V6G A;  1X64 A;  5FXZ A;  1B8T A;  5LKT A;  3NIJ A;  1QLI A;  4EZ4 A;  2L4Z A;  2D8Z A;  1CTL A;  2DFY C;  5A1L A;  3IXE B;  3NIL A;  4HI9 B;  5FY1 A;  1J2O A;  1WYH A;  1X62 A;  4UF0 B;  2LXD A;  5FXX A;  4JCJ A;  2YPA C;  2EHE A;  1X6A A;  2CUQ A;  4EYU A;  2COR A;  2O10 A;  5FY7 A;  2L6Z C;  1X4L A;  3F6Q B;  4KFZ A;  1M3V A;  1X63 A;  3NIS A;  2D8X A;  5FYM A;  1IBI A;  1A7I A;  3MMK A;  2DJ7 A;  2DLO A;  2L6Y B;  3AVR A;  2XUE A;  2IYB E;  4ASK A;  5LKZ A;  3AVS A;  5FXV A;  5LKU A;  3NIH A;  1X68 A;  4UF0 A;  2DAR A;  4BHW A;  5FP3 A;  1IML A;  1X3H A;  2LZU A;  5LKX A;  1WIG A;  2KBX B;  1X61 A; 
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