1FO6A

Crystal structure analysis of n-carbamoyl-d-amino-acid amidohydrolase
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
302
structure length
302
Chain Sequence
RQMILAVGQQGPIARAETREQVVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMEEGCMLLGHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREHIFNFKAHRQPQHYGLIAEF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure and site-directed mutagenesis studies of N-carbamoyl-D-amino-acid amidohydrolase from Agrobacterium radiobacter reveals a homotetramer and insight into a catalytic cleft.
pubmed doi rcsb
molecule tags Hydrolase
source organism Agrobacterium tumefaciens
molecule keywords N-CARBAMoYL-D-AMINO-ACID AMIDOHYDROLASE
total genus 104
structure length 302
sequence length 302
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.77: N-carbamoyl-D-amino-acid hydrolase.
pdb deposition date 2000-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 1fo6A00
4H5UA 4HGDA 4HG3A 1ERZA 5H8LA 3KLCA 4CYFA 4IZUA 4F4HA 2VHHA 3HKXA 4IZTA 2E2KA 4HG5A 2GGLA 3ILVA 4IZSA 3SYTA 5JQNA 2W1VA 4GYNA 3SZGA 5H8JA 5H8KA 1UF8A 4IZWA 5H8IA 2PLQA 4LF0A 3N05A 5KHAA 3SDBA 3KI8A 2VHIA 1FO6A 1EMSA 1UF4A 1J31A 1UF7A 3WUYA 4KZFA 3IW3A 1F89A 3IVZA 3P8KA 4CYYA 4GYLA 2GGKA 2E11A 2UXYA 2E2LA 4CYGA 3SEZA 2DYUA 3DLAA 1UF5A 3SEQA 4IZVA 2DYVA
chains in the Genus database with same CATH superfamily
4H5UA 4HGDA 4HG3A 1ERZA 5H8LA 3KLCA 4CYFA 4IZUA 4F4HA 2VHHA 3HKXA 4IZTA 2E2KA 4HG5A 2GGLA 3ILVA 4IZSA 3SYTA 5JQNA 2W1VA 4GYNA 3SZGA 5H8JA 5H8KA 1UF8A 4IZWA 5H8IA 2PLQA 4LF0A 3N05A 5KHAA 3SDBA 3KI8A 2VHIA 1FO6A 1EMSA 1UF4A 1J31A 1UF7A 3WUYA 4KZFA 3IW3A 1F89A 3IVZA 3P8KA 4CYYA 4GYLA 2GGKA 2E11A 2UXYA 2E2LA 4CYGA 3SEZA 2DYUA 3DLAA 1UF5A 3SEQA 4IZVA 2DYVA
chains in the Genus database with same CATH topology
4H5UA 4HGDA 4HG3A 1ERZA 5H8LA 3KLCA 4CYFA 4IZUA 4F4HA 2VHHA 3HKXA 4IZTA 2E2KA 4HG5A 2GGLA 3ILVA 4IZSA 3SYTA 5JQNA 2W1VA 4GYNA 3SZGA 5H8JA 5H8KA 1UF8A 4IZWA 5H8IA 2PLQA 4LF0A 3N05A 5KHAA 3SDBA 3KI8A 2VHIA 1FO6A 1EMSA 1UF4A 1J31A 1UF7A 3WUYA 4KZFA 3IW3A 1F89A 3IVZA 3P8KA 4CYYA 4GYLA 2GGKA 2E11A 2UXYA 2E2LA 4CYGA 3SEZA 2DYUA 3DLAA 1UF5A 3SEQA 4IZVA 2DYVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H5U A;  4HGD A;  4HG3 A;  1ERZ A;  5H8L A;  3KLC A;  4CYF A;  4IZU A;  4F4H A;  2VHH A;  3HKX A;  4IZT A;  2E2K A;  4HG5 A;  2GGL A;  3ILV A;  4IZS A;  3SYT A;  5JQN A;  2W1V A;  4GYN A;  3SZG A;  5H8J A;  5H8K A;  1UF8 A;  4IZW A;  5H8I A;  2PLQ A;  4LF0 A;  3N05 A;  5KHA A;  3SDB A;  3KI8 A;  2VHI A;  1FO6 A;  1EMS A;  1UF4 A;  1J31 A;  1UF7 A;  3WUY A;  4KZF A;  3IW3 A;  1F89 A;  3IVZ A;  3P8K A;  4CYY A;  4GYL A;  2GGK A;  2E11 A;  2UXY A;  2E2L A;  4CYG A;  3SEZ A;  2DYU A;  3DLA A;  1UF5 A;  3SEQ A;  4IZV A;  2DYV A; 
#chains in the Genus database with same CATH topology
 4H5U A;  4HGD A;  4HG3 A;  1ERZ A;  5H8L A;  3KLC A;  4CYF A;  4IZU A;  4F4H A;  2VHH A;  3HKX A;  4IZT A;  2E2K A;  4HG5 A;  2GGL A;  3ILV A;  4IZS A;  3SYT A;  5JQN A;  2W1V A;  4GYN A;  3SZG A;  5H8J A;  5H8K A;  1UF8 A;  4IZW A;  5H8I A;  2PLQ A;  4LF0 A;  3N05 A;  5KHA A;  3SDB A;  3KI8 A;  2VHI A;  1FO6 A;  1EMS A;  1UF4 A;  1J31 A;  1UF7 A;  3WUY A;  4KZF A;  3IW3 A;  1F89 A;  3IVZ A;  3P8K A;  4CYY A;  4GYL A;  2GGK A;  2E11 A;  2UXY A;  2E2L A;  4CYG A;  3SEZ A;  2DYU A;  3DLA A;  1UF5 A;  3SEQ A;  4IZV A;  2DYV A; 
#chains in the Genus database with same CATH homology
 4H5U A;  4HGD A;  4HG3 A;  1ERZ A;  5H8L A;  3KLC A;  4CYF A;  4IZU A;  4F4H A;  2VHH A;  3HKX A;  4IZT A;  2E2K A;  4HG5 A;  2GGL A;  3ILV A;  4IZS A;  3SYT A;  5JQN A;  2W1V A;  4GYN A;  3SZG A;  5H8J A;  5H8K A;  1UF8 A;  4IZW A;  5H8I A;  2PLQ A;  4LF0 A;  3N05 A;  5KHA A;  3SDB A;  3KI8 A;  2VHI A;  1FO6 A;  1EMS A;  1UF4 A;  1J31 A;  1UF7 A;  3WUY A;  4KZF A;  3IW3 A;  1F89 A;  3IVZ A;  3P8K A;  4CYY A;  4GYL A;  2GGK A;  2E11 A;  2UXY A;  2E2L A;  4CYG A;  3SEZ A;  2DYU A;  3DLA A;  1UF5 A;  3SEQ A;  4IZV A;  2DYV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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