3HKXA

Crystal structure analysis of an amidase from nesterenkonia sp.
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
273
structure length
263
Chain Sequence
SSGLVIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPDDYLQDRRAELHRNWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Unique aliphatic amidase from a psychrotrophic and haloalkaliphilic nesterenkonia isolate.
pubmed doi rcsb
molecule tags Hydrolase
source organism Nesterenkonia sp. 10004
molecule keywords Amidase
total genus 79
structure length 263
sequence length 273
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2009-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 3hkxA00
2GGLA 2DYVA 3IVZA 1ERZA 3SEQA 4IZVA 4IZTA 4IZUA 4CYGA 2DYUA 4H5UA 2PLQA 2VHIA 3P8KA 4CYFA 2E2LA 4KZFA 2VHHA 1EMSA 4HG3A 4LF0A 3SEZA 4HG5A 2E2KA 4IZSA 2E11A 5KHAA 4IZWA 4F4HA 1UF8A 1J31A 1UF7A 5H8JA 1UF4A 4CYYA 3KI8A 1F89A 1FO6A 2UXYA 2GGKA 2W1VA 3ILVA 5H8LA 3SDBA 3HKXA 3KLCA 3WUYA 5H8KA 3DLAA 5JQNA 5H8IA 4GYNA 1UF5A 4HGDA 3N05A 3SYTA 3IW3A 4GYLA 3SZGA
chains in the Genus database with same CATH superfamily
2GGLA 2DYVA 3IVZA 1ERZA 3SEQA 4IZVA 4IZTA 4IZUA 4CYGA 2DYUA 4H5UA 2PLQA 2VHIA 3P8KA 4CYFA 2E2LA 4KZFA 2VHHA 1EMSA 4HG3A 4LF0A 3SEZA 4HG5A 2E2KA 4IZSA 2E11A 5KHAA 4IZWA 4F4HA 1UF8A 1J31A 1UF7A 5H8JA 1UF4A 4CYYA 3KI8A 1F89A 1FO6A 2UXYA 2GGKA 2W1VA 3ILVA 5H8LA 3SDBA 3HKXA 3KLCA 3WUYA 5H8KA 3DLAA 5JQNA 5H8IA 4GYNA 1UF5A 4HGDA 3N05A 3SYTA 3IW3A 4GYLA 3SZGA
chains in the Genus database with same CATH topology
2GGLA 2DYVA 3IVZA 1ERZA 3SEQA 4IZVA 4IZTA 4IZUA 4CYGA 2DYUA 4H5UA 2PLQA 2VHIA 3P8KA 4CYFA 2E2LA 4KZFA 2VHHA 1EMSA 4HG3A 4LF0A 3SEZA 4HG5A 2E2KA 4IZSA 2E11A 5KHAA 4IZWA 4F4HA 1UF8A 1J31A 1UF7A 5H8JA 1UF4A 4CYYA 3KI8A 1F89A 1FO6A 2UXYA 2GGKA 2W1VA 3ILVA 5H8LA 3SDBA 3HKXA 3KLCA 3WUYA 5H8KA 3DLAA 5JQNA 5H8IA 4GYNA 1UF5A 4HGDA 3N05A 3SYTA 3IW3A 4GYLA 3SZGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GGL A;  2DYV A;  3IVZ A;  1ERZ A;  3SEQ A;  4IZV A;  4IZT A;  4IZU A;  4CYG A;  2DYU A;  4H5U A;  2PLQ A;  2VHI A;  3P8K A;  4CYF A;  2E2L A;  4KZF A;  2VHH A;  1EMS A;  4HG3 A;  4LF0 A;  3SEZ A;  4HG5 A;  2E2K A;  4IZS A;  2E11 A;  5KHA A;  4IZW A;  4F4H A;  1UF8 A;  1J31 A;  1UF7 A;  5H8J A;  1UF4 A;  4CYY A;  3KI8 A;  1F89 A;  1FO6 A;  2UXY A;  2GGK A;  2W1V A;  3ILV A;  5H8L A;  3SDB A;  3HKX A;  3KLC A;  3WUY A;  5H8K A;  3DLA A;  5JQN A;  5H8I A;  4GYN A;  1UF5 A;  4HGD A;  3N05 A;  3SYT A;  3IW3 A;  4GYL A;  3SZG A; 
#chains in the Genus database with same CATH topology
 2GGL A;  2DYV A;  3IVZ A;  1ERZ A;  3SEQ A;  4IZV A;  4IZT A;  4IZU A;  4CYG A;  2DYU A;  4H5U A;  2PLQ A;  2VHI A;  3P8K A;  4CYF A;  2E2L A;  4KZF A;  2VHH A;  1EMS A;  4HG3 A;  4LF0 A;  3SEZ A;  4HG5 A;  2E2K A;  4IZS A;  2E11 A;  5KHA A;  4IZW A;  4F4H A;  1UF8 A;  1J31 A;  1UF7 A;  5H8J A;  1UF4 A;  4CYY A;  3KI8 A;  1F89 A;  1FO6 A;  2UXY A;  2GGK A;  2W1V A;  3ILV A;  5H8L A;  3SDB A;  3HKX A;  3KLC A;  3WUY A;  5H8K A;  3DLA A;  5JQN A;  5H8I A;  4GYN A;  1UF5 A;  4HGD A;  3N05 A;  3SYT A;  3IW3 A;  4GYL A;  3SZG A; 
#chains in the Genus database with same CATH homology
 2GGL A;  2DYV A;  3IVZ A;  1ERZ A;  3SEQ A;  4IZV A;  4IZT A;  4IZU A;  4CYG A;  2DYU A;  4H5U A;  2PLQ A;  2VHI A;  3P8K A;  4CYF A;  2E2L A;  4KZF A;  2VHH A;  1EMS A;  4HG3 A;  4LF0 A;  3SEZ A;  4HG5 A;  2E2K A;  4IZS A;  2E11 A;  5KHA A;  4IZW A;  4F4H A;  1UF8 A;  1J31 A;  1UF7 A;  5H8J A;  1UF4 A;  4CYY A;  3KI8 A;  1F89 A;  1FO6 A;  2UXY A;  2GGK A;  2W1V A;  3ILV A;  5H8L A;  3SDB A;  3HKX A;  3KLC A;  3WUY A;  5H8K A;  3DLA A;  5JQN A;  5H8I A;  4GYN A;  1UF5 A;  4HGD A;  3N05 A;  3SYT A;  3IW3 A;  4GYL A;  3SZG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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