3HKXA

Crystal structure analysis of an amidase from nesterenkonia sp.
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
273
structure length
263
Chain Sequence
SSGLVIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPDDYLQDRRAELHRNWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Unique aliphatic amidase from a psychrotrophic and haloalkaliphilic nesterenkonia isolate.
pubmed doi rcsb
source organism Nesterenkonia sp. 10004
molecule tags Hydrolase
molecule keywords Amidase
total genus 79
structure length 263
sequence length 273
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2009-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 3hkxA00
3P8KA 4H5UA 3SYTA 2PLQA 1J31A 3DLAA 5H8KA 1EMSA 1F89A 3ILVA 4IZUA 5H8JA 3SZGA 1FO6A 2VHHA 4IZVA 4F4HA 4GYLA 4GYNA 1UF4A 1UF7A 2VHIA 4HGDA 3KLCA 2E11A 2E2KA 3SEQA 3SDBA 4KZFA 2GGKA 2W1VA 4IZWA 5H8IA 3HKXA 2E2LA 5H8LA 2DYUA 3WUYA 2DYVA 4IZSA 4IZTA 4CYGA 3N05A 3IVZA 3SEZA 1ERZA 5JQNA 3KI8A 3IW3A 2GGLA 4CYYA 2UXYA 4HG5A 4LF0A 1UF5A 1UF8A 4CYFA 5KHAA 4HG3A
chains in the Genus database with same CATH superfamily
3P8KA 4H5UA 3SYTA 2PLQA 1J31A 3DLAA 5H8KA 1EMSA 1F89A 3ILVA 4IZUA 5H8JA 3SZGA 1FO6A 2VHHA 4IZVA 4F4HA 4GYLA 4GYNA 1UF4A 1UF7A 2VHIA 4HGDA 3KLCA 2E11A 2E2KA 3SEQA 3SDBA 4KZFA 2GGKA 2W1VA 4IZWA 5H8IA 3HKXA 2E2LA 5H8LA 2DYUA 3WUYA 2DYVA 4IZSA 4IZTA 4CYGA 3N05A 3IVZA 3SEZA 1ERZA 5JQNA 3KI8A 3IW3A 2GGLA 4CYYA 2UXYA 4HG5A 4LF0A 1UF5A 1UF8A 4CYFA 5KHAA 4HG3A
chains in the Genus database with same CATH topology
3P8KA 4H5UA 3SYTA 2PLQA 1J31A 3DLAA 5H8KA 1EMSA 1F89A 3ILVA 4IZUA 5H8JA 3SZGA 1FO6A 2VHHA 4IZVA 4F4HA 4GYLA 4GYNA 1UF4A 1UF7A 2VHIA 4HGDA 3KLCA 2E11A 2E2KA 3SEQA 3SDBA 4KZFA 2GGKA 2W1VA 4IZWA 5H8IA 3HKXA 2E2LA 5H8LA 2DYUA 3WUYA 2DYVA 4IZSA 4IZTA 4CYGA 3N05A 3IVZA 3SEZA 1ERZA 5JQNA 3KI8A 3IW3A 2GGLA 4CYYA 2UXYA 4HG5A 4LF0A 1UF5A 1UF8A 4CYFA 5KHAA 4HG3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P8K A;  4H5U A;  3SYT A;  2PLQ A;  1J31 A;  3DLA A;  5H8K A;  1EMS A;  1F89 A;  3ILV A;  4IZU A;  5H8J A;  3SZG A;  1FO6 A;  2VHH A;  4IZV A;  4F4H A;  4GYL A;  4GYN A;  1UF4 A;  1UF7 A;  2VHI A;  4HGD A;  3KLC A;  2E11 A;  2E2K A;  3SEQ A;  3SDB A;  4KZF A;  2GGK A;  2W1V A;  4IZW A;  5H8I A;  3HKX A;  2E2L A;  5H8L A;  2DYU A;  3WUY A;  2DYV A;  4IZS A;  4IZT A;  4CYG A;  3N05 A;  3IVZ A;  3SEZ A;  1ERZ A;  5JQN A;  3KI8 A;  3IW3 A;  2GGL A;  4CYY A;  2UXY A;  4HG5 A;  4LF0 A;  1UF5 A;  1UF8 A;  4CYF A;  5KHA A;  4HG3 A; 
#chains in the Genus database with same CATH topology
 3P8K A;  4H5U A;  3SYT A;  2PLQ A;  1J31 A;  3DLA A;  5H8K A;  1EMS A;  1F89 A;  3ILV A;  4IZU A;  5H8J A;  3SZG A;  1FO6 A;  2VHH A;  4IZV A;  4F4H A;  4GYL A;  4GYN A;  1UF4 A;  1UF7 A;  2VHI A;  4HGD A;  3KLC A;  2E11 A;  2E2K A;  3SEQ A;  3SDB A;  4KZF A;  2GGK A;  2W1V A;  4IZW A;  5H8I A;  3HKX A;  2E2L A;  5H8L A;  2DYU A;  3WUY A;  2DYV A;  4IZS A;  4IZT A;  4CYG A;  3N05 A;  3IVZ A;  3SEZ A;  1ERZ A;  5JQN A;  3KI8 A;  3IW3 A;  2GGL A;  4CYY A;  2UXY A;  4HG5 A;  4LF0 A;  1UF5 A;  1UF8 A;  4CYF A;  5KHA A;  4HG3 A; 
#chains in the Genus database with same CATH homology
 3P8K A;  4H5U A;  3SYT A;  2PLQ A;  1J31 A;  3DLA A;  5H8K A;  1EMS A;  1F89 A;  3ILV A;  4IZU A;  5H8J A;  3SZG A;  1FO6 A;  2VHH A;  4IZV A;  4F4H A;  4GYL A;  4GYN A;  1UF4 A;  1UF7 A;  2VHI A;  4HGD A;  3KLC A;  2E11 A;  2E2K A;  3SEQ A;  3SDB A;  4KZF A;  2GGK A;  2W1V A;  4IZW A;  5H8I A;  3HKX A;  2E2L A;  5H8L A;  2DYU A;  3WUY A;  2DYV A;  4IZS A;  4IZT A;  4CYG A;  3N05 A;  3IVZ A;  3SEZ A;  1ERZ A;  5JQN A;  3KI8 A;  3IW3 A;  2GGL A;  4CYY A;  2UXY A;  4HG5 A;  4LF0 A;  1UF5 A;  1UF8 A;  4CYF A;  5KHA A;  4HG3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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