1JYAA

Crystal structure of syce
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
117
structure length
117
Chain Sequence
YSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (4-15)TI6 (95-98)TVIII1 (20-23)S2 (34-40)TVIII2 (24-27)S1 (26-31)TII'1 (31-34)TIV1 (40-43)TII1 (42-45)S5 (86-90)S6 (93-94)EMPTYS3 (45-50)AH3 (101-117)AH2 (60-65)TI2 (65-68)TVIII3 (70-73)TI3 (72-75)S4 (77-81)TI5 (94-97)TI1 (55-58)TIV2 (81-84)Updating...
connected with : NaN
publication title Structure of the Yersinia type III secretory system chaperone SycE.
pubmed doi rcsb
molecule keywords YOPE regulator
molecule tags Chaperone
source organism Yersinia pseudotuberculosis
total genus 22
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05932 CesT Tir chaperone protein (CesT) family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.10 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 1jyaA00
1JYOA 1K3EA 2BSHA 1K3SA 1K6ZA 3TU3A 1XKPB 1XKPC 2BSJA 1JYAA 2BSIA 2XGAA 1L2WA 3CXJA 1RY9A 4GF3A 3EPUA 1S28A 4G6TA 4AKXA 2BHOA 1TTWA 4JMFB 1N5BA 2PLGA 3KXYA 2FM8A
chains in the Genus database with same CATH superfamily
1JYOA 1K3EA 1U2VD 2BSHA 1K3SA 1K6ZA 2P9IF 2P9UF 3DWLF 3DXKF 2DYTA 4H5BA 3TU3A 3VX8B 1XKPB 1XKPC 2KC5A 2BSJA 2P9KF 2P9ID 2P9UD 3DWLD 1JYAA 3DXKD 4JD2F 2BSIA 2P9LF 1L2WA 2P9KD 2P9PF 2XGAA 3CXJA 4XEIF 4JD2D 3ULEF 3DXMF 2P9LD 4GSLC 1RY9A 2P9PD 4GF3A 1K8KF 3EPUA 4XEID 3RSEF 3UKRF 2P9NF 1S28A 3UKUF 3VX7B 3DXMD 4G6TA 1TYQF 4AKXA 2BHOA 3ULED 1K8KD 3UKRD 1TTWA 4JMFB 1N5BA 2P9ND 3RSED 3UKUD 4EBRA 1TYQD 2P9SF 2LPUA 2OD0A 2PLGA 3KXYA 1U2VF 2P9SD 2MQDA 2FM8A
chains in the Genus database with same CATH topology
1JYOA 1K3EA 1U2VD 2BSHA 1K3SA 1K6ZA 2P9IF 2P9UF 3DWLF 3DXKF 2DYTA 4H5BA 3TU3A 3VX8B 1XKPB 1XKPC 2KC5A 2BSJA 2P9KF 2P9ID 2P9UD 3DWLD 1JYAA 3DXKD 4JD2F 2BSIA 2P9LF 1L2WA 2P9KD 2P9PF 2XGAA 3CXJA 4XEIF 4JD2D 3ULEF 3DXMF 2P9LD 4GSLC 1RY9A 2P9PD 4GF3A 1K8KF 3EPUA 4XEID 3RSEF 3UKRF 2P9NF 1S28A 3UKUF 3VX7B 3DXMD 4G6TA 1TYQF 4AKXA 2BHOA 3ULED 1K8KD 3UKRD 1TTWA 4JMFB 1N5BA 2P9ND 3RSED 3UKUD 4EBRA 1TYQD 2P9SF 2LPUA 2PLGA 3KXYA 1U2VF 2P9SD 2MQDA 2FM8A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1JYO A;  1K3E A;  2BSH A;  1K3S A;  1K6Z A;  3TU3 A;  1XKP B;  1XKP C;  2BSJ A;  1JYA A;  2BSI A;  2XGA A;  1L2W A;  3CXJ A;  1RY9 A;  4GF3 A;  3EPU A;  1S28 A;  4G6T A;  4AKX A;  2BHO A;  1TTW A;  4JMF B;  1N5B A;  2PLG A;  3KXY A;  2FM8 A; 
#chains in the Genus database with same CATH topology
 1JYO A;  1K3E A;  1U2V D;  2BSH A;  1K3S A;  1K6Z A;  2P9I F;  2P9U F;  3DWL F;  3DXK F;  2DYT A;  4H5B A;  3TU3 A;  3VX8 B;  1XKP B;  1XKP C;  2KC5 A;  2BSJ A;  2P9K F;  2P9I D;  2P9U D;  3DWL D;  1JYA A;  3DXK D;  4JD2 F;  2BSI A;  2P9L F;  1L2W A;  2P9K D;  2P9P F;  2XGA A;  3CXJ A;  4XEI F;  4JD2 D;  3ULE F;  3DXM F;  2P9L D;  4GSL C;  1RY9 A;  2P9P D;  4GF3 A;  1K8K F;  3EPU A;  4XEI D;  3RSE F;  3UKR F;  2P9N F;  1S28 A;  3UKU F;  3VX7 B;  3DXM D;  4G6T A;  1TYQ F;  4AKX A;  2BHO A;  3ULE D;  1K8K D;  3UKR D;  1TTW A;  4JMF B;  1N5B A;  2P9N D;  3RSE D;  3UKU D;  4EBR A;  1TYQ D;  2P9S F;  2LPU A;  2OD0 A;  2PLG A;  3KXY A;  1U2V F;  2P9S D;  2MQD A;  2FM8 A; 
#chains in the Genus database with same CATH homology
 1JYO A;  1K3E A;  1U2V D;  2BSH A;  1K3S A;  1K6Z A;  2P9I F;  2P9U F;  3DWL F;  3DXK F;  2DYT A;  4H5B A;  3TU3 A;  3VX8 B;  1XKP B;  1XKP C;  2KC5 A;  2BSJ A;  2P9K F;  2P9I D;  2P9U D;  3DWL D;  1JYA A;  3DXK D;  4JD2 F;  2BSI A;  2P9L F;  1L2W A;  2P9K D;  2P9P F;  2XGA A;  3CXJ A;  4XEI F;  4JD2 D;  3ULE F;  3DXM F;  2P9L D;  4GSL C;  1RY9 A;  2P9P D;  4GF3 A;  1K8K F;  3EPU A;  4XEI D;  3RSE F;  3UKR F;  2P9N F;  1S28 A;  3UKU F;  3VX7 B;  3DXM D;  4G6T A;  1TYQ F;  4AKX A;  2BHO A;  3ULE D;  1K8K D;  3UKR D;  1TTW A;  4JMF B;  1N5B A;  2P9N D;  3RSE D;  3UKU D;  4EBR A;  1TYQ D;  2P9S F;  2LPU A;  2PLG A;  3KXY A;  1U2V F;  2P9S D;  2MQD A;  2FM8 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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