1KMPA

Crystal structure of the outer membrane transporter feca complexed with ferric citrate
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
647
structure length
647
Chain Sequence
NDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYDADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis of gating by the outer membrane transporter FecA.
pubmed doi rcsb
molecule tags Membrane protein
source organism Escherichia coli k12
molecule keywords IRON(III) DICITRATE TRANSPORT PROTEIN FECA
total genus 183
structure length 647
sequence length 647
ec nomenclature
pdb deposition date 2001-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07660 STN Secretin and TonB N terminus short domain
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 1kmpA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 1kmpA01
4RDTA 4CU4A 1FI1A 2W75A 2W6TA 1BY3A 4B7OA 1NQFA 2W16A 1PO0A 3V8XA 2GSKA 3CSNA 1XKHA 2W76A 2W6UA 1XKWA 3EFMA 1UJWA 1QFGA 4EPAA 1NQHA 4AIQA 1KMOA 5FOKA 2HDFA 1QKCA 2O5PA 3RGMA 1NQGA 3DDRA 1FCPA 3V89A 3RGNA 1BY5A 1NQEA 1PNZA 2FCPA 2IAHA 3QLBA 3FHHA 2HDIA 1KMPA 1QFFA 4RDRA 3M8DA 2W78A 3M8BA 1FEPA 1QJQA 2GUFA 2GRXA 2W77A 3CSLA 2YSUA 4AIPA 1PO3A
chains in the Genus database with same CATH superfamily
1OH2P 4RDTA 4CU4A 1FI1A 2W75A 1A0SP 2W6TA 1JBIA 1BY3A 1OH2Q 1AF6A 1MPMA 4B7OA 1NQFA 1MPQA 1PO0A 3V8XA 2GSKA 3CSNA 2W16A 1XKHA 2W76A 2W6UA 1XKWA 3EFMA 1UJWA 1QFGA 4EPAA 1NQHA 4AIQA 1MPNA 1KMOA 1MPRA 5FOKA 1QKCA 2HDFA 2O5PA 3RGMA 1NQGA 1A0TP 1FCPA 3DDRA 3V89A 3RGNA 1BY5A 1NQEA 1PNZA 2FCPA 2IAHA 2MPRA 3QLBA 2HDIA 1KMPA 3FHHA 1QFFA 4RDRA 3M8DA 2W78A 3M8BA 1FEPA 1QJQA 2GUFA 2GRXA 2W77A 1MALA 1MPOA 3CSLA 2YSUA 4AIPA 1PO3A
chains in the Genus database with same CATH topology
4RDTA 4CU4A 1FI1A 2W75A 2W6TA 1BY3A 4B7OA 1NQFA 2W16A 1PO0A 3V8XA 2GSKA 3CSNA 1XKHA 2W76A 2W6UA 1XKWA 3EFMA 1UJWA 1QFGA 4EPAA 1NQHA 4AIQA 1KMOA 5FOKA 2HDFA 1QKCA 2O5PA 3RGMA 1NQGA 3DDRA 1FCPA 3V89A 3RGNA 1BY5A 1NQEA 1PNZA 2FCPA 2IAHA 3QLBA 3FHHA 2HDIA 1KMPA 1QFFA 4RDRA 3M8DA 2W78A 3M8BA 1FEPA 1QJQA 2GUFA 2GRXA 2W77A 3CSLA 2YSUA 4AIPA 1PO3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RDT A;  4CU4 A;  1FI1 A;  2W75 A;  2W6T A;  1BY3 A;  4B7O A;  1NQF A;  2W16 A;  1PO0 A;  3V8X A;  2GSK A;  3CSN A;  1XKH A;  2W76 A;  2W6U A;  1XKW A;  3EFM A;  1UJW A;  1QFG A;  4EPA A;  1NQH A;  4AIQ A;  1KMO A;  5FOK A;  2HDF A;  1QKC A;  2O5P A;  3RGM A;  1NQG A;  3DDR A;  1FCP A;  3V89 A;  3RGN A;  1BY5 A;  1NQE A;  1PNZ A;  2FCP A;  2IAH A;  3QLB A;  3FHH A;  2HDI A;  1KMP A;  1QFF A;  4RDR A;  3M8D A;  2W78 A;  3M8B A;  1FEP A;  1QJQ A;  2GUF A;  2GRX A;  2W77 A;  3CSL A;  2YSU A;  4AIP A;  1PO3 A; 
#chains in the Genus database with same CATH topology
 1OH2 P;  4RDT A;  4CU4 A;  1FI1 A;  2W75 A;  1A0S P;  2W6T A;  1JBI A;  1BY3 A;  1OH2 Q;  1AF6 A;  1MPM A;  4B7O A;  1NQF A;  1MPQ A;  1PO0 A;  3V8X A;  2GSK A;  3CSN A;  2W16 A;  1XKH A;  2W76 A;  2W6U A;  1XKW A;  3EFM A;  1UJW A;  1QFG A;  4EPA A;  1NQH A;  4AIQ A;  1MPN A;  1KMO A;  1MPR A;  5FOK A;  1QKC A;  2HDF A;  2O5P A;  3RGM A;  1NQG A;  1A0T P;  1FCP A;  3DDR A;  3V89 A;  3RGN A;  1BY5 A;  1NQE A;  1PNZ A;  2FCP A;  2IAH A;  2MPR A;  3QLB A;  2HDI A;  1KMP A;  3FHH A;  1QFF A;  4RDR A;  3M8D A;  2W78 A;  3M8B A;  1FEP A;  1QJQ A;  2GUF A;  2GRX A;  2W77 A;  1MAL A;  1MPO A;  3CSL A;  2YSU A;  4AIP A;  1PO3 A; 
#chains in the Genus database with same CATH homology
 4RDT A;  4CU4 A;  1FI1 A;  2W75 A;  2W6T A;  1BY3 A;  4B7O A;  1NQF A;  2W16 A;  1PO0 A;  3V8X A;  2GSK A;  3CSN A;  1XKH A;  2W76 A;  2W6U A;  1XKW A;  3EFM A;  1UJW A;  1QFG A;  4EPA A;  1NQH A;  4AIQ A;  1KMO A;  5FOK A;  2HDF A;  1QKC A;  2O5P A;  3RGM A;  1NQG A;  3DDR A;  1FCP A;  3V89 A;  3RGN A;  1BY5 A;  1NQE A;  1PNZ A;  2FCP A;  2IAH A;  3QLB A;  3FHH A;  2HDI A;  1KMP A;  1QFF A;  4RDR A;  3M8D A;  2W78 A;  3M8B A;  1FEP A;  1QJQ A;  2GUF A;  2GRX A;  2W77 A;  3CSL A;  2YSU A;  4AIP A;  1PO3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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