1OH2Q

Sucrose-specific porin, with bound sucrose molecules
Total Genus 100
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
413
structure length
413
Chain Sequence
SGFEFHGYAPSGVIMNDSGASTKSGAYITPAGETGGAIGPLGNAADTYVIMNLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVLQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFAIHWILSCVVFLAGTGGGIYDVKWNDGLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQMETAF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Salmonella typhimurium
publication title Sucrose-Specific Porin, with Bound Sucrose Molecules
rcsb
molecule keywords Sucrose porin
total genus 100
structure length 413
sequence length 413
ec nomenclature
pdb deposition date 2003-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Q PF02264 LamB LamB porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.10 Mainly Beta Beta Barrel Maltoporin; Chain A Porin, LamB type 1oh2Q00
1MALA 1OH2Q 1MPRA 1A0SP 2MPRA 1OH2P 1MPMA 1AF6A 1MPQA 1MPNA 1MPOA 1A0TP
chains in the Genus database with same CATH superfamily
3CSLA 4AIPA 1QJQA 1BY3A 2W76A 1MPRA 1A0SP 2MPRA 2W6UA 3FHHA 1FCPA 1AF6A 3CSNA 1MPOA 2IAHA 3RGNA 1MALA 1UJWA 1NQFA 1XKWA 2HDFA 1PO0A 2W6TA 2GRXA 4EPAA 1MPNA 1FEPA 1QFGA 2W16A 3M8BA 1QKCA 1PNZA 3M8DA 2W78A 1NQGA 3RGMA 1PO3A 2HDIA 3EFMA 4CU4A 1OH2P 1MPMA 1QFFA 2YSUA 1NQEA 1KMOA 3QLBA 3DDRA 1A0TP 4AIQA 1XKHA 2W77A 1OH2Q 1NQHA 2GSKA 4B7OA 1FI1A 3V89A 1BY5A 2FCPA 3V8XA 2O5PA 1MPQA 5FOKA 2W75A 2GUFA 1KMPA
chains in the Genus database with same CATH topology
1MALA 1OH2Q 1MPRA 1A0SP 2MPRA 1OH2P 1MPMA 1AF6A 1MPQA 1MPNA 1MPOA 1A0TP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MAL A;  1OH2 Q;  1MPR A;  1A0S P;  2MPR A;  1OH2 P;  1MPM A;  1AF6 A;  1MPQ A;  1MPN A;  1MPO A;  1A0T P; 
#chains in the Genus database with same CATH topology
 3CSL A;  4AIP A;  1QJQ A;  1BY3 A;  2W76 A;  1MPR A;  1A0S P;  2MPR A;  2W6U A;  3FHH A;  1FCP A;  1AF6 A;  3CSN A;  1MPO A;  2IAH A;  3RGN A;  1MAL A;  1UJW A;  1NQF A;  1XKW A;  2HDF A;  1PO0 A;  2W6T A;  2GRX A;  4EPA A;  1MPN A;  1FEP A;  1QFG A;  2W16 A;  3M8B A;  1QKC A;  1PNZ A;  3M8D A;  2W78 A;  1NQG A;  3RGM A;  1PO3 A;  2HDI A;  3EFM A;  4CU4 A;  1OH2 P;  1MPM A;  1QFF A;  2YSU A;  1NQE A;  1KMO A;  3QLB A;  3DDR A;  1A0T P;  4AIQ A;  1XKH A;  2W77 A;  1OH2 Q;  1NQH A;  2GSK A;  4B7O A;  1FI1 A;  3V89 A;  1BY5 A;  2FCP A;  3V8X A;  2O5P A;  1MPQ A;  5FOK A;  2W75 A;  2GUF A;  1KMP A; 
#chains in the Genus database with same CATH homology
 1MAL A;  1OH2 Q;  1MPR A;  1A0S P;  2MPR A;  1OH2 P;  1MPM A;  1AF6 A;  1MPQ A;  1MPN A;  1MPO A;  1A0T P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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