1TBD | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	134
structure length	134
Chain Sequence	GSKVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAINNYAQKLCTFSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPESS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 134 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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134 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Simian virus 40
publication title	Solution structure of the origin DNA-binding domain of SV40 T-antigen. pubmed doi rcsb
molecule keywords	SV40 T-ANTIGEN
total genus	23
structure length	134
sequence length	134
ec nomenclature
pdb deposition date	1996-11-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02217	T_Ag_DNA_bind	Origin of replication binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1310.20	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1; Chain: A,	Replication Protein E1; Chain: A,	1tbdA00

3QN2A 4LMDA 4NBPA 3QK2A 4FGNA 4ZQ9A 1TBDA 3QFQA 4FB3A 5D9IA 5DCXA 4LIFA 2ITLA 5CYNA 1M55A 1RZ9A 4GDFA 2ITJA 1Z1DB 5BYGA 1L2MA 2IPRA 1L5IA 2NL8A 1UUTA 2NTCA 2HW0A 2TBDA 4ZO0A 2FUFA 2IF9A
chains in the Genus database with same CATH superfamily

3QN2A 3DKYA 4LMDA 4NBPA 3QK2A 1F08A 4KW3A 4FGNA 1KSXA 4ZQ9A 1TBDA 3QFQA 1KSYA 5D9IA 4FB3A 5DCXA 4LIFA 2ITLA 5CYNA 1M55A 1RZ9A 4GDFA 2ITJA 1Z1DB 5BYGA 1L2MA 2IPRA 4U87A 1L5IA 2NL8A 1R9WA 1UUTA 2NTCA 3DKXA 2HW0A 2TBDA 4ZO0A 2FUFA 2IF9A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3QN2 A;  4LMD A;  4NBP A;  3QK2 A;  4FGN A;  4ZQ9 A;  1TBD A;  3QFQ A;  4FB3 A;  5D9I A;  5DCX A;  4LIF A;  2ITL A;  5CYN A;  1M55 A;  1RZ9 A;  4GDF A;  2ITJ A;  1Z1D B;  5BYG A;  1L2M A;  2IPR A;  1L5I A;  2NL8 A;  1UUT A;  2NTC A;  2HW0 A;  2TBD A;  4ZO0 A;  2FUF A;  2IF9 A; 
#chains in the Genus database with same CATH topology
 3QN2 A;  3DKY A;  4LMD A;  4NBP A;  3QK2 A;  1F08 A;  4KW3 A;  4FGN A;  1KSX A;  4ZQ9 A;  1TBD A;  3QFQ A;  1KSY A;  5D9I A;  4FB3 A;  5DCX A;  4LIF A;  2ITL A;  5CYN A;  1M55 A;  1RZ9 A;  4GDF A;  2ITJ A;  1Z1D B;  5BYG A;  1L2M A;  2IPR A;  4U87 A;  1L5I A;  2NL8 A;  1R9W A;  1UUT A;  2NTC A;  3DKX A;  2HW0 A;  2TBD A;  4ZO0 A;  2FUF A;  2IF9 A; 
#chains in the Genus database with same CATH homology
 3QN2 A;  3DKY A;  4LMD A;  4NBP A;  3QK2 A;  1F08 A;  4KW3 A;  4FGN A;  1KSX A;  4ZQ9 A;  1TBD A;  3QFQ A;  1KSY A;  5D9I A;  4FB3 A;  5DCX A;  4LIF A;  2ITL A;  5CYN A;  1M55 A;  1RZ9 A;  4GDF A;  2ITJ A;  1Z1D B;  5BYG A;  1L2M A;  2IPR A;  4U87 A;  1L5I A;  2NL8 A;  1R9W A;  1UUT A;  2NTC A;  3DKX A;  2HW0 A;  2TBD A;  4ZO0 A;  2FUF A;  2IF9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1TBDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations