1TYQ | Genus

Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	88
sequence length	282
structure length	274
Chain Sequence	MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLEGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 274 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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274 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structures of actin-related protein 2/3 complex with bound ATP or ADP pubmed doi rcsb
molecule keywords	Actin-related protein 3
molecule tags	Structural protein
total genus	88
structure length	274
sequence length	282
ec nomenclature
pdb deposition date	2004-07-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF04045	P34-Arc	Arp2/3 complex, 34 kD subunit p34-Arc

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.20	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	1tyqD01
3.30.1460.20	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	1tyqD02

3DWLF 4XEIF 2P9KD 3ULED 2P9SF 2P9NF 3UKUD 1U2VF 2P9UF 3DXMF 2P9LF 1TYQF 3UKRD 3DXKD 1K8KF 4JD2D 3RSED 2P9PF 2P9IF 3DWLD 4XEID 2P9KF 1U2VD 2P9SD 2P9ND 3UKUF 3ULEF 2P9UD 3DXMD 2P9LD 1TYQD 3UKRF 3DXKF 1K8KD 4JD2F 3RSEF 2P9PD 2P9ID
chains in the Genus database with same CATH superfamily

1K3EA 1XKPC 3DWLF 4XEIF 2P9KD 3ULED 1L2WA 2P9NF 2P9SF 3UKUD 3VX7B 1U2VF 2P9UF 3DXMF 1XKPB 2P9LF 1N5BA 1TYQF 1K3SA 3DXKD 3UKRD 1K8KF 2XGAA 4H5BA 2OD0A 4JD2D 1RY9A 3RSED 2BHOA 3VX8B 2P9PF 2KC5A 2P9IF 4JMFB 4AKXA 4GSLC 4EBRA 1K6ZA 2FM8A 2BSHA 2LPUA 1TTWA 3DWLD 4XEID 2P9KF 1U2VD 1JYOA 2BSIA 2MQDA 2P9ND 2P9SD 3KXYA 4G6TA 1S28A 4GF3A 3ULEF 2P9UD 3DXMD 2P9LD 1TYQD 3UKRF 3DXKF 1K8KD 2PLGA 4JD2F 3UKUF 3RSEF 1JYAA 3EPUA 2DYTA 2P9PD 2P9ID 3TU3A 3CXJA 2BSJA
chains in the Genus database with same CATH topology

1K3EA 1XKPC 3DWLF 4XEIF 2P9KD 3ULED 1L2WA 2P9NF 2P9SF 3UKUD 3VX7B 1U2VF 2P9UF 3DXMF 1XKPB 2P9LF 1N5BA 1TYQF 1K3SA 3DXKD 3UKRD 1K8KF 2XGAA 4H5BA 4JD2D 1RY9A 3RSED 2BHOA 3VX8B 2P9PF 2KC5A 2P9IF 4JMFB 4AKXA 4GSLC 4EBRA 1K6ZA 2FM8A 2BSHA 2LPUA 1TTWA 3DWLD 4XEID 2P9KF 1U2VD 1JYOA 2BSIA 2MQDA 2P9ND 2P9SD 3KXYA 4G6TA 1S28A 4GF3A 3ULEF 2P9UD 3DXMD 2P9LD 1TYQD 3UKRF 3DXKF 1K8KD 2PLGA 4JD2F 3UKUF 3RSEF 1JYAA 3EPUA 2DYTA 2P9PD 2P9ID 3TU3A 3CXJA 2BSJA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3DWL F;  4XEI F;  2P9K D;  3ULE D;  2P9S F;  2P9N F;  3UKU D;  1U2V F;  2P9U F;  3DXM F;  2P9L F;  1TYQ F;  3UKR D;  3DXK D;  1K8K F;  4JD2 D;  3RSE D;  2P9P F;  2P9I F;  3DWL D;  4XEI D;  2P9K F;  1U2V D;  2P9S D;  2P9N D;  3UKU F;  3ULE F;  2P9U D;  3DXM D;  2P9L D;  1TYQ D;  3UKR F;  3DXK F;  1K8K D;  4JD2 F;  3RSE F;  2P9P D;  2P9I D; 
#chains in the Genus database with same CATH topology
 1K3E A;  1XKP C;  3DWL F;  4XEI F;  2P9K D;  3ULE D;  1L2W A;  2P9N F;  2P9S F;  3UKU D;  3VX7 B;  1U2V F;  2P9U F;  3DXM F;  1XKP B;  2P9L F;  1N5B A;  1TYQ F;  1K3S A;  3DXK D;  3UKR D;  1K8K F;  2XGA A;  4H5B A;  2OD0 A;  4JD2 D;  1RY9 A;  3RSE D;  2BHO A;  3VX8 B;  2P9P F;  2KC5 A;  2P9I F;  4JMF B;  4AKX A;  4GSL C;  4EBR A;  1K6Z A;  2FM8 A;  2BSH A;  2LPU A;  1TTW A;  3DWL D;  4XEI D;  2P9K F;  1U2V D;  1JYO A;  2BSI A;  2MQD A;  2P9N D;  2P9S D;  3KXY A;  4G6T A;  1S28 A;  4GF3 A;  3ULE F;  2P9U D;  3DXM D;  2P9L D;  1TYQ D;  3UKR F;  3DXK F;  1K8K D;  2PLG A;  4JD2 F;  3UKU F;  3RSE F;  1JYA A;  3EPU A;  2DYT A;  2P9P D;  2P9I D;  3TU3 A;  3CXJ A;  2BSJ A; 
#chains in the Genus database with same CATH homology
 1K3E A;  1XKP C;  3DWL F;  4XEI F;  2P9K D;  3ULE D;  1L2W A;  2P9N F;  2P9S F;  3UKU D;  3VX7 B;  1U2V F;  2P9U F;  3DXM F;  1XKP B;  2P9L F;  1N5B A;  1TYQ F;  1K3S A;  3DXK D;  3UKR D;  1K8K F;  2XGA A;  4H5B A;  4JD2 D;  1RY9 A;  3RSE D;  2BHO A;  3VX8 B;  2P9P F;  2KC5 A;  2P9I F;  4JMF B;  4AKX A;  4GSL C;  4EBR A;  1K6Z A;  2FM8 A;  2BSH A;  2LPU A;  1TTW A;  3DWL D;  4XEI D;  2P9K F;  1U2V D;  1JYO A;  2BSI A;  2MQD A;  2P9N D;  2P9S D;  3KXY A;  4G6T A;  1S28 A;  4GF3 A;  3ULE F;  2P9U D;  3DXM D;  2P9L D;  1TYQ D;  3UKR F;  3DXK F;  1K8K D;  2PLG A;  4JD2 F;  3UKU F;  3RSE F;  1JYA A;  3EPU A;  2DYT A;  2P9P D;  2P9I D;  3TU3 A;  3CXJ A;  2BSJ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1TYQD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations