1UF7A

Crystal structure of c171a/v236a mutant of n-carbamyl-d-amino acid amidohydrolase complexed with n-carbamyl-d-valine
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
303
structure length
303
Chain Sequence
TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Agrobacterium sp.
publication title Crystal structure of C171A/V236A Mutant of N-carbamyl-D-amino acid amidohydrolase
rcsb
molecule keywords N-carbamyl-D-amino acid amidohydrolase
total genus 103
structure length 303
sequence length 303
chains with identical sequence B
ec nomenclature ec 3.5.1.77: N-carbamoyl-D-amino-acid hydrolase.
pdb deposition date 2003-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 1uf7A00
2VHHA 3IW3A 2UXYA 4IZWA 5KHAA 4CYYA 4H5UA 3SDBA 3P8KA 1UF5A 1UF7A 2GGKA 3DLAA 3ILVA 3WUYA 3SEZA 3IVZA 1UF8A 4KZFA 1UF4A 3SEQA 2PLQA 2W1VA 3HKXA 3N05A 5JQNA 4GYLA 2E2LA 4HGDA 4IZUA 2E2KA 4IZVA 5H8LA 5H8IA 3SZGA 4CYFA 1FO6A 4LF0A 5H8KA 5H8JA 2DYVA 3KI8A 4CYGA 2DYUA 2GGLA 2VHIA 4IZTA 1F89A 4HG5A 4IZSA 1J31A 4HG3A 3KLCA 3SYTA 1EMSA 4F4HA 2E11A 4GYNA 1ERZA
chains in the Genus database with same CATH superfamily
2VHHA 3IW3A 2UXYA 4IZWA 5KHAA 4CYYA 4H5UA 3SDBA 3P8KA 1UF5A 1UF7A 2GGKA 3DLAA 3ILVA 3WUYA 3SEZA 3IVZA 1UF8A 4KZFA 1UF4A 3SEQA 2PLQA 2W1VA 3HKXA 3N05A 5JQNA 4GYLA 2E2LA 4HGDA 4IZUA 2E2KA 4IZVA 5H8LA 5H8IA 3SZGA 4CYFA 1FO6A 4LF0A 5H8KA 5H8JA 2DYVA 3KI8A 4CYGA 2DYUA 2GGLA 2VHIA 4IZTA 1F89A 4HG5A 4IZSA 1J31A 4HG3A 3KLCA 3SYTA 1EMSA 4F4HA 2E11A 4GYNA 1ERZA
chains in the Genus database with same CATH topology
2VHHA 3IW3A 2UXYA 4IZWA 5KHAA 4CYYA 4H5UA 3SDBA 3P8KA 1UF5A 1UF7A 2GGKA 3DLAA 3ILVA 3WUYA 3SEZA 3IVZA 1UF8A 4KZFA 1UF4A 3SEQA 2PLQA 2W1VA 3HKXA 3N05A 5JQNA 4GYLA 2E2LA 4HGDA 4IZUA 2E2KA 4IZVA 5H8LA 5H8IA 3SZGA 4CYFA 1FO6A 4LF0A 5H8KA 5H8JA 2DYVA 3KI8A 4CYGA 2DYUA 2GGLA 2VHIA 4IZTA 1F89A 4HG5A 4IZSA 1J31A 4HG3A 3KLCA 3SYTA 1EMSA 4F4HA 2E11A 4GYNA 1ERZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VHH A;  3IW3 A;  2UXY A;  4IZW A;  5KHA A;  4CYY A;  4H5U A;  3SDB A;  3P8K A;  1UF5 A;  1UF7 A;  2GGK A;  3DLA A;  3ILV A;  3WUY A;  3SEZ A;  3IVZ A;  1UF8 A;  4KZF A;  1UF4 A;  3SEQ A;  2PLQ A;  2W1V A;  3HKX A;  3N05 A;  5JQN A;  4GYL A;  2E2L A;  4HGD A;  4IZU A;  2E2K A;  4IZV A;  5H8L A;  5H8I A;  3SZG A;  4CYF A;  1FO6 A;  4LF0 A;  5H8K A;  5H8J A;  2DYV A;  3KI8 A;  4CYG A;  2DYU A;  2GGL A;  2VHI A;  4IZT A;  1F89 A;  4HG5 A;  4IZS A;  1J31 A;  4HG3 A;  3KLC A;  3SYT A;  1EMS A;  4F4H A;  2E11 A;  4GYN A;  1ERZ A; 
#chains in the Genus database with same CATH topology
 2VHH A;  3IW3 A;  2UXY A;  4IZW A;  5KHA A;  4CYY A;  4H5U A;  3SDB A;  3P8K A;  1UF5 A;  1UF7 A;  2GGK A;  3DLA A;  3ILV A;  3WUY A;  3SEZ A;  3IVZ A;  1UF8 A;  4KZF A;  1UF4 A;  3SEQ A;  2PLQ A;  2W1V A;  3HKX A;  3N05 A;  5JQN A;  4GYL A;  2E2L A;  4HGD A;  4IZU A;  2E2K A;  4IZV A;  5H8L A;  5H8I A;  3SZG A;  4CYF A;  1FO6 A;  4LF0 A;  5H8K A;  5H8J A;  2DYV A;  3KI8 A;  4CYG A;  2DYU A;  2GGL A;  2VHI A;  4IZT A;  1F89 A;  4HG5 A;  4IZS A;  1J31 A;  4HG3 A;  3KLC A;  3SYT A;  1EMS A;  4F4H A;  2E11 A;  4GYN A;  1ERZ A; 
#chains in the Genus database with same CATH homology
 2VHH A;  3IW3 A;  2UXY A;  4IZW A;  5KHA A;  4CYY A;  4H5U A;  3SDB A;  3P8K A;  1UF5 A;  1UF7 A;  2GGK A;  3DLA A;  3ILV A;  3WUY A;  3SEZ A;  3IVZ A;  1UF8 A;  4KZF A;  1UF4 A;  3SEQ A;  2PLQ A;  2W1V A;  3HKX A;  3N05 A;  5JQN A;  4GYL A;  2E2L A;  4HGD A;  4IZU A;  2E2K A;  4IZV A;  5H8L A;  5H8I A;  3SZG A;  4CYF A;  1FO6 A;  4LF0 A;  5H8K A;  5H8J A;  2DYV A;  3KI8 A;  4CYG A;  2DYU A;  2GGL A;  2VHI A;  4IZT A;  1F89 A;  4HG5 A;  4IZS A;  1J31 A;  4HG3 A;  3KLC A;  3SYT A;  1EMS A;  4F4H A;  2E11 A;  4GYN A;  1ERZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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