1V6GA

Solution structure of the lim domain of the human actin binding lim protein 2
Total Genus 6

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
81
structure length
81
Chain Sequence
GSSGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV3 (25-28)S1 (17-18)S2 (23-24)TI1 (38-41)S4 (35-37)TIV1 (18-21)TIV4 (31-34)TIV6 (39-42)TIV7 (44-47)S5 (57-59)S6 (64-66)AH1 (67-70)TIV9 (60-63)3H1 (10-12)TIV2 (19-22)S3 (30-32)Updating...
connected with : NaN
publication title Solution Structure of the LIM Domain of the Human Actin Binding LIM Protein 2
rcsb
molecule keywords Actin Binding LIM Protein 2
molecule tags Metal binding protein
source organism Homo sapiens
total genus 6
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 2003-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 1v6gA00
1U5SB 2CUPA 2IYBE 2O10A 1CXXA 1WIGA 2MIUA 1X68A 2LZUA 2D8ZA 2DARA 1X62A 2L4ZA 2MBVA 1WYHA 1IMLA 4KFZA 1V6GA 1X64A 2DFYC 4JCJA 1IBIA 1X4LA 2DLOA 2CURA 2EGQA 2CO8A 2LXDA 1X61A 2XQNT 1RUTX 1X63A 3F6QB 1G47A 2L6ZC 1J2OA 1NYPA 2XJYA 2CUQA 1QLIA 2CU8A 2DJ7A 2D8YA 2EHEA 4HI8B 4HI9B 2YPAC 2JTNA 1X6AA 3MMKA 1B8TA 1A7IA 1X3HA 1CTLA 2O13A 2XJZA 1M3VA 3IXEB 2CORA 2KBXB 2L6YB 2D8XA
chains in the Genus database with same CATH superfamily
5FY1A 3AVSA 2IYBE 1WIGA 2MIUA 5LKXA 1V6GA 1X64A 4JCJA 1X4LA 3NIHA 2CO8A 2LXDA 1X61A 3F6QB 1RUTX 1X63A 2XJYA 5FXXA 2EHEA 2D8YA 2YPAC 1X6AA 3NIKA 1B8TA 1M3VA 3NIJA 2CORA 2L6YB 2D8XA 3NISA 3NINA 2CUPA 2O10A 1X68A 5LKTA 1X62A 2MBVA 1WYHA 5FP3A 4EYUA 5LKZA 1G47A 2XQNT 5FXVA 5FYMA 1NYPA 4EZ4A 4HI9B 2JTNA 5A1LA 1CTLA 2O13A 2XJZA 3ZPOA 2KBXB 1U5SB 4UF0A 2XUEA 4BHWA 2DFYC 2DLOA 2CURA 5LKUA 4UF0B 5FXWA 1J2OA 5FXZA 2CUQA 4HI8B 3MMKA 4ASKA 3AVRA 3NILA 1CXXA 2LZUA 2D8ZA 2DARA 1IMLA 4KFZA 1IBIA 2EGQA 2L6ZC 4EZHA 1QLIA 2CU8A 2DJ7A 3ZLIA 5FY0A 1A7IA 1X3HA 3IXEB 3NIMA 5FY7A 2L4ZA
chains in the Genus database with same CATH topology
5FY1A 3AVSA 2IYBE 1WIGA 2MIUA 5LKXA 1V6GA 1X64A 4JCJA 1X4LA 3NIHA 2CO8A 2LXDA 1X61A 3F6QB 1RUTX 1X63A 2XJYA 5FXXA 2EHEA 2D8YA 2YPAC 1X6AA 3NIKA 1B8TA 1M3VA 3NIJA 2CORA 2L6YB 2D8XA 3NISA 3NINA 2CUPA 2O10A 1X68A 5LKTA 1X62A 2MBVA 1WYHA 5FP3A 4EYUA 5LKZA 1G47A 2XQNT 5FXVA 5FYMA 1NYPA 4EZ4A 4HI9B 2JTNA 5A1LA 1CTLA 2O13A 2XJZA 3ZPOA 2KBXB 1U5SB 4UF0A 2XUEA 4BHWA 2DFYC 2DLOA 2CURA 5LKUA 4UF0B 5FXWA 1J2OA 5FXZA 2CUQA 4HI8B 3MMKA 4ASKA 3AVRA 3NILA 1CXXA 2LZUA 2D8ZA 2DARA 1IMLA 4KFZA 1IBIA 2EGQA 2L6ZC 4EZHA 1QLIA 2CU8A 2DJ7A 3ZLIA 5FY0A 1A7IA 1X3HA 3IXEB 3NIMA 5FY7A 2L4ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U5S B;  2CUP A;  2IYB E;  2O10 A;  1CXX A;  1WIG A;  2MIU A;  1X68 A;  2LZU A;  2D8Z A;  2DAR A;  1X62 A;  2L4Z A;  2MBV A;  1WYH A;  1IML A;  4KFZ A;  1V6G A;  1X64 A;  2DFY C;  4JCJ A;  1IBI A;  1X4L A;  2DLO A;  2CUR A;  2EGQ A;  2CO8 A;  2LXD A;  1X61 A;  2XQN T;  1RUT X;  1X63 A;  3F6Q B;  1G47 A;  2L6Z C;  1J2O A;  1NYP A;  2XJY A;  2CUQ A;  1QLI A;  2CU8 A;  2DJ7 A;  2D8Y A;  2EHE A;  4HI8 B;  4HI9 B;  2YPA C;  2JTN A;  1X6A A;  3MMK A;  1B8T A;  1A7I A;  1X3H A;  1CTL A;  2O13 A;  2XJZ A;  1M3V A;  3IXE B;  2COR A;  2KBX B;  2L6Y B;  2D8X A; 
#chains in the Genus database with same CATH topology
 5FY1 A;  3AVS A;  2IYB E;  1WIG A;  2MIU A;  5LKX A;  1V6G A;  1X64 A;  4JCJ A;  1X4L A;  3NIH A;  2CO8 A;  2LXD A;  1X61 A;  3F6Q B;  1RUT X;  1X63 A;  2XJY A;  5FXX A;  2EHE A;  2D8Y A;  2YPA C;  1X6A A;  3NIK A;  1B8T A;  1M3V A;  3NIJ A;  2COR A;  2L6Y B;  2D8X A;  3NIS A;  3NIN A;  2CUP A;  2O10 A;  1X68 A;  5LKT A;  1X62 A;  2MBV A;  1WYH A;  5FP3 A;  4EYU A;  5LKZ A;  1G47 A;  2XQN T;  5FXV A;  5FYM A;  1NYP A;  4EZ4 A;  4HI9 B;  2JTN A;  5A1L A;  1CTL A;  2O13 A;  2XJZ A;  3ZPO A;  2KBX B;  1U5S B;  4UF0 A;  2XUE A;  4BHW A;  2DFY C;  2DLO A;  2CUR A;  5LKU A;  4UF0 B;  5FXW A;  1J2O A;  5FXZ A;  2CUQ A;  4HI8 B;  3MMK A;  4ASK A;  3AVR A;  3NIL A;  1CXX A;  2LZU A;  2D8Z A;  2DAR A;  1IML A;  4KFZ A;  1IBI A;  2EGQ A;  2L6Z C;  4EZH A;  1QLI A;  2CU8 A;  2DJ7 A;  3ZLI A;  5FY0 A;  1A7I A;  1X3H A;  3IXE B;  3NIM A;  5FY7 A;  2L4Z A; 
#chains in the Genus database with same CATH homology
 5FY1 A;  3AVS A;  2IYB E;  1WIG A;  2MIU A;  5LKX A;  1V6G A;  1X64 A;  4JCJ A;  1X4L A;  3NIH A;  2CO8 A;  2LXD A;  1X61 A;  3F6Q B;  1RUT X;  1X63 A;  2XJY A;  5FXX A;  2EHE A;  2D8Y A;  2YPA C;  1X6A A;  3NIK A;  1B8T A;  1M3V A;  3NIJ A;  2COR A;  2L6Y B;  2D8X A;  3NIS A;  3NIN A;  2CUP A;  2O10 A;  1X68 A;  5LKT A;  1X62 A;  2MBV A;  1WYH A;  5FP3 A;  4EYU A;  5LKZ A;  1G47 A;  2XQN T;  5FXV A;  5FYM A;  1NYP A;  4EZ4 A;  4HI9 B;  2JTN A;  5A1L A;  1CTL A;  2O13 A;  2XJZ A;  3ZPO A;  2KBX B;  1U5S B;  4UF0 A;  2XUE A;  4BHW A;  2DFY C;  2DLO A;  2CUR A;  5LKU A;  4UF0 B;  5FXW A;  1J2O A;  5FXZ A;  2CUQ A;  4HI8 B;  3MMK A;  4ASK A;  3AVR A;  3NIL A;  1CXX A;  2LZU A;  2D8Z A;  2DAR A;  1IML A;  4KFZ A;  1IBI A;  2EGQ A;  2L6Z C;  4EZH A;  1QLI A;  2CU8 A;  2DJ7 A;  3ZLI A;  5FY0 A;  1A7I A;  1X3H A;  3IXE B;  3NIM A;  5FY7 A;  2L4Z A; 
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