1X61A

Solution structure of the first lim domain of thyroid receptor interacting protein 6 (trip6)
Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
72
structure length
72
Chain Sequence
GSSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (8-11)TIV2 (9-12)S2 (27-29)EMPTYTIV7 (30-33)TIV8 (31-34)TIV11 (43-46)TIV9 (36-39)AH1 (58-67)S4 (54-57)S1 (22-24)S3 (48-51)Updating...
connected with : NaN
publication title Solution structure of the first LIM domain of thyroid receptor interacting protein 6 (TRIP6)
rcsb
molecule keywords Thyroid receptor interacting protein 6
molecule tags Cell adhesion
source organism Homo sapiens
total genus 8
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 2005-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 1x61A00
2XJZA 1U5SB 1X3HA 2CU8A 1G47A 1IBIA 2CUQA 1NYPA 2YPAC 1RUTX 1IMLA 1CXXA 1V6GA 2IYBE 3F6QB 2D8XA 2O13A 2L6ZC 1X64A 1WYHA 2DLOA 1X62A 4HI9B 1X63A 2D8ZA 2L4ZA 2XQNT 1QLIA 3IXEB 4KFZA 1B8TA 2DJ7A 1X6AA 2MBVA 1WIGA 1CTLA 1J2OA 2LZUA 2CUPA 2CO8A 2DARA 2MIUA 2EGQA 2KBXB 2L6YB 1X4LA 1X61A 2D8YA 2O10A 2EHEA 2LXDA 2XJYA 3MMKA 1A7IA 2JTNA 2CURA 2DFYC 4JCJA 1X68A 2CORA 4HI8B 1M3VA
chains in the Genus database with same CATH superfamily
5LKZA 4BHWA 1NYPA 3AVSA 1CXXA 5FP3A 4EZ4A 3F6QB 2O13A 1X63A 2L4ZA 2XQNT 1QLIA 2DJ7A 3NILA 1WIGA 1CTLA 1J2OA 3NIMA 5FY7A 2L6YB 4JCJA 5LKXA 5LKUA 1M3VA 5FY0A 2XJZA 1X3HA 4EZHA 1IBIA 4ASKA 3NINA 1RUTX 1IMLA 2D8XA 2L6ZC 1X64A 5FYMA 1X62A 2D8ZA 3IXEB 1X6AA 2EHEA 3ZPOA 5A1LA 2CU8A 5FXVA 5FXWA 4KFZA 4EYUA 3NIKA 2LZUA 2XUEA 2CO8A 2DARA 2MIUA 3ZLIA 2EGQA 2KBXB 1X4LA 1X61A 3MMKA 2CURA 4HI8B 1U5SB 1G47A 2CUQA 2YPAC 1V6GA 2IYBE 3NISA 1WYHA 2DLOA 4HI9B 1B8TA 5FXXA 5FY1A 5FXZA 2MBVA 3NIHA 5LKTA 2CUPA 4UF0B 4UF0A 2D8YA 2O10A 2XJYA 3AVRA 2LXDA 1A7IA 2JTNA 2DFYC 1X68A 2CORA 3NIJA
chains in the Genus database with same CATH topology
5LKZA 4BHWA 1NYPA 3AVSA 1CXXA 5FP3A 4EZ4A 3F6QB 2O13A 1X63A 2L4ZA 2XQNT 1QLIA 2DJ7A 3NILA 1WIGA 1CTLA 1J2OA 3NIMA 5FY7A 2L6YB 4JCJA 5LKXA 5LKUA 1M3VA 5FY0A 2XJZA 1X3HA 4EZHA 1IBIA 4ASKA 3NINA 1RUTX 1IMLA 2D8XA 2L6ZC 1X64A 5FYMA 1X62A 2D8ZA 3IXEB 1X6AA 2EHEA 3ZPOA 5A1LA 2CU8A 5FXVA 5FXWA 4KFZA 4EYUA 3NIKA 2LZUA 2XUEA 2CO8A 2DARA 2MIUA 3ZLIA 2EGQA 2KBXB 1X4LA 1X61A 3MMKA 2CURA 4HI8B 1U5SB 1G47A 2CUQA 2YPAC 1V6GA 2IYBE 3NISA 1WYHA 2DLOA 4HI9B 1B8TA 5FXXA 5FY1A 5FXZA 2MBVA 3NIHA 5LKTA 2CUPA 4UF0B 4UF0A 2D8YA 2O10A 2XJYA 3AVRA 2LXDA 1A7IA 2JTNA 2DFYC 1X68A 2CORA 3NIJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XJZ A;  1U5S B;  1X3H A;  2CU8 A;  1G47 A;  1IBI A;  2CUQ A;  1NYP A;  2YPA C;  1RUT X;  1IML A;  1CXX A;  1V6G A;  2IYB E;  3F6Q B;  2D8X A;  2O13 A;  2L6Z C;  1X64 A;  1WYH A;  2DLO A;  1X62 A;  4HI9 B;  1X63 A;  2D8Z A;  2L4Z A;  2XQN T;  1QLI A;  3IXE B;  4KFZ A;  1B8T A;  2DJ7 A;  1X6A A;  2MBV A;  1WIG A;  1CTL A;  1J2O A;  2LZU A;  2CUP A;  2CO8 A;  2DAR A;  2MIU A;  2EGQ A;  2KBX B;  2L6Y B;  1X4L A;  1X61 A;  2D8Y A;  2O10 A;  2EHE A;  2LXD A;  2XJY A;  3MMK A;  1A7I A;  2JTN A;  2CUR A;  2DFY C;  4JCJ A;  1X68 A;  2COR A;  4HI8 B;  1M3V A; 
#chains in the Genus database with same CATH topology
 5LKZ A;  4BHW A;  1NYP A;  3AVS A;  1CXX A;  5FP3 A;  4EZ4 A;  3F6Q B;  2O13 A;  1X63 A;  2L4Z A;  2XQN T;  1QLI A;  2DJ7 A;  3NIL A;  1WIG A;  1CTL A;  1J2O A;  3NIM A;  5FY7 A;  2L6Y B;  4JCJ A;  5LKX A;  5LKU A;  1M3V A;  5FY0 A;  2XJZ A;  1X3H A;  4EZH A;  1IBI A;  4ASK A;  3NIN A;  1RUT X;  1IML A;  2D8X A;  2L6Z C;  1X64 A;  5FYM A;  1X62 A;  2D8Z A;  3IXE B;  1X6A A;  2EHE A;  3ZPO A;  5A1L A;  2CU8 A;  5FXV A;  5FXW A;  4KFZ A;  4EYU A;  3NIK A;  2LZU A;  2XUE A;  2CO8 A;  2DAR A;  2MIU A;  3ZLI A;  2EGQ A;  2KBX B;  1X4L A;  1X61 A;  3MMK A;  2CUR A;  4HI8 B;  1U5S B;  1G47 A;  2CUQ A;  2YPA C;  1V6G A;  2IYB E;  3NIS A;  1WYH A;  2DLO A;  4HI9 B;  1B8T A;  5FXX A;  5FY1 A;  5FXZ A;  2MBV A;  3NIH A;  5LKT A;  2CUP A;  4UF0 B;  4UF0 A;  2D8Y A;  2O10 A;  2XJY A;  3AVR A;  2LXD A;  1A7I A;  2JTN A;  2DFY C;  1X68 A;  2COR A;  3NIJ A; 
#chains in the Genus database with same CATH homology
 5LKZ A;  4BHW A;  1NYP A;  3AVS A;  1CXX A;  5FP3 A;  4EZ4 A;  3F6Q B;  2O13 A;  1X63 A;  2L4Z A;  2XQN T;  1QLI A;  2DJ7 A;  3NIL A;  1WIG A;  1CTL A;  1J2O A;  3NIM A;  5FY7 A;  2L6Y B;  4JCJ A;  5LKX A;  5LKU A;  1M3V A;  5FY0 A;  2XJZ A;  1X3H A;  4EZH A;  1IBI A;  4ASK A;  3NIN A;  1RUT X;  1IML A;  2D8X A;  2L6Z C;  1X64 A;  5FYM A;  1X62 A;  2D8Z A;  3IXE B;  1X6A A;  2EHE A;  3ZPO A;  5A1L A;  2CU8 A;  5FXV A;  5FXW A;  4KFZ A;  4EYU A;  3NIK A;  2LZU A;  2XUE A;  2CO8 A;  2DAR A;  2MIU A;  3ZLI A;  2EGQ A;  2KBX B;  1X4L A;  1X61 A;  3MMK A;  2CUR A;  4HI8 B;  1U5S B;  1G47 A;  2CUQ A;  2YPA C;  1V6G A;  2IYB E;  3NIS A;  1WYH A;  2DLO A;  4HI9 B;  1B8T A;  5FXX A;  5FY1 A;  5FXZ A;  2MBV A;  3NIH A;  5LKT A;  2CUP A;  4UF0 B;  4UF0 A;  2D8Y A;  2O10 A;  2XJY A;  3AVR A;  2LXD A;  1A7I A;  2JTN A;  2DFY C;  1X68 A;  2COR A;  3NIJ A; 
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