1X61A

Solution structure of the first lim domain of thyroid receptor interacting protein 6 (trip6)
Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
72
structure length
72
Chain Sequence
GSSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (8-11)TIV2 (9-12)S2 (27-29)EMPTYTIV7 (30-33)TIV8 (31-34)TIV11 (43-46)TIV9 (36-39)AH1 (58-67)S4 (54-57)S1 (22-24)S3 (48-51)Updating...
connected with : NaN
publication title Solution structure of the first LIM domain of thyroid receptor interacting protein 6 (TRIP6)
rcsb
molecule keywords Thyroid receptor interacting protein 6
molecule tags Cell adhesion
source organism Homo sapiens
total genus 8
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 2005-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 1x61A00
1WYHA 1IMLA 2CURA 2KBXB 4HI8B 2EGQA 1RUTX 1U5SB 2DFYC 1CXXA 2CO8A 1QLIA 1X6AA 2IYBE 2MIUA 1J2OA 2L6YB 2D8ZA 1X63A 1G47A 1X3HA 2CUPA 2DLOA 3MMKA 2XJYA 3IXEB 1X62A 2EHEA 1X64A 1NYPA 2O13A 1X68A 2D8XA 1WIGA 1M3VA 4HI9B 2L6ZC 2XJZA 2LXDA 1X4LA 2MBVA 1V6GA 4JCJA 2O10A 1CTLA 2CU8A 2L4ZA 2YPAC 1X61A 2CORA 2D8YA 2LZUA 2JTNA 2CUQA 2XQNT 3F6QB 4KFZA 1A7IA 1B8TA 2DJ7A 2DARA 1IBIA
chains in the Genus database with same CATH superfamily
2KBXB 5LKTA 1RUTX 1U5SB 1CXXA 2CO8A 1QLIA 3AVRA 2D8ZA 2XJYA 5FY0A 2XJZA 1V6GA 2O10A 1CTLA 2CU8A 2XUEA 2YPAC 2CUQA 3NIMA 3NISA 1B8TA 4UF0A 1IMLA 2EGQA 5LKXA 3NILA 4EYUA 2IYBE 3NINA 1X63A 3NIHA 4BHWA 2D8XA 1M3VA 4HI9B 4JCJA 3F6QB 3NIKA 1A7IA 5FY7A 3AVSA 3ZPOA 5FY1A 5FXVA 2CURA 4UF0B 5A1LA 2DFYC 2MIUA 2L6YB 2DLOA 3IXEB 2EHEA 1X64A 1NYPA 1X68A 5FXZA 2LXDA 1X4LA 2MBVA 2L4ZA 4KFZA 2JTNA 5FP3A 5FXWA 3NIJA 5FYMA 2DJ7A 2DARA 5FXXA 4ASKA 1IBIA 1WYHA 4HI8B 3ZLIA 1X6AA 4EZHA 1J2OA 1G47A 1X3HA 2CUPA 4EZ4A 3MMKA 5LKZA 1X62A 2O13A 1WIGA 5LKUA 2L6ZC 1X61A 2CORA 2D8YA 2LZUA 2XQNT
chains in the Genus database with same CATH topology
2KBXB 5LKTA 1RUTX 1U5SB 1CXXA 2CO8A 1QLIA 3AVRA 2D8ZA 2XJYA 5FY0A 2XJZA 1V6GA 2O10A 1CTLA 2CU8A 2XUEA 2YPAC 2CUQA 3NIMA 3NISA 1B8TA 4UF0A 1IMLA 2EGQA 5LKXA 3NILA 4EYUA 2IYBE 3NINA 1X63A 3NIHA 4BHWA 2D8XA 1M3VA 4HI9B 4JCJA 3F6QB 3NIKA 1A7IA 5FY7A 3AVSA 3ZPOA 5FY1A 5FXVA 2CURA 4UF0B 5A1LA 2DFYC 2MIUA 2L6YB 2DLOA 3IXEB 2EHEA 1X64A 1NYPA 1X68A 5FXZA 2LXDA 1X4LA 2MBVA 2L4ZA 4KFZA 2JTNA 5FP3A 5FXWA 3NIJA 5FYMA 2DJ7A 2DARA 5FXXA 4ASKA 1IBIA 1WYHA 4HI8B 3ZLIA 1X6AA 4EZHA 1J2OA 1G47A 1X3HA 2CUPA 4EZ4A 3MMKA 5LKZA 1X62A 2O13A 1WIGA 5LKUA 2L6ZC 1X61A 2CORA 2D8YA 2LZUA 2XQNT
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WYH A;  1IML A;  2CUR A;  2KBX B;  4HI8 B;  2EGQ A;  1RUT X;  1U5S B;  2DFY C;  1CXX A;  2CO8 A;  1QLI A;  1X6A A;  2IYB E;  2MIU A;  1J2O A;  2L6Y B;  2D8Z A;  1X63 A;  1G47 A;  1X3H A;  2CUP A;  2DLO A;  3MMK A;  2XJY A;  3IXE B;  1X62 A;  2EHE A;  1X64 A;  1NYP A;  2O13 A;  1X68 A;  2D8X A;  1WIG A;  1M3V A;  4HI9 B;  2L6Z C;  2XJZ A;  2LXD A;  1X4L A;  2MBV A;  1V6G A;  4JCJ A;  2O10 A;  1CTL A;  2CU8 A;  2L4Z A;  2YPA C;  1X61 A;  2COR A;  2D8Y A;  2LZU A;  2JTN A;  2CUQ A;  2XQN T;  3F6Q B;  4KFZ A;  1A7I A;  1B8T A;  2DJ7 A;  2DAR A;  1IBI A; 
#chains in the Genus database with same CATH topology
 2KBX B;  5LKT A;  1RUT X;  1U5S B;  1CXX A;  2CO8 A;  1QLI A;  3AVR A;  2D8Z A;  2XJY A;  5FY0 A;  2XJZ A;  1V6G A;  2O10 A;  1CTL A;  2CU8 A;  2XUE A;  2YPA C;  2CUQ A;  3NIM A;  3NIS A;  1B8T A;  4UF0 A;  1IML A;  2EGQ A;  5LKX A;  3NIL A;  4EYU A;  2IYB E;  3NIN A;  1X63 A;  3NIH A;  4BHW A;  2D8X A;  1M3V A;  4HI9 B;  4JCJ A;  3F6Q B;  3NIK A;  1A7I A;  5FY7 A;  3AVS A;  3ZPO A;  5FY1 A;  5FXV A;  2CUR A;  4UF0 B;  5A1L A;  2DFY C;  2MIU A;  2L6Y B;  2DLO A;  3IXE B;  2EHE A;  1X64 A;  1NYP A;  1X68 A;  5FXZ A;  2LXD A;  1X4L A;  2MBV A;  2L4Z A;  4KFZ A;  2JTN A;  5FP3 A;  5FXW A;  3NIJ A;  5FYM A;  2DJ7 A;  2DAR A;  5FXX A;  4ASK A;  1IBI A;  1WYH A;  4HI8 B;  3ZLI A;  1X6A A;  4EZH A;  1J2O A;  1G47 A;  1X3H A;  2CUP A;  4EZ4 A;  3MMK A;  5LKZ A;  1X62 A;  2O13 A;  1WIG A;  5LKU A;  2L6Z C;  1X61 A;  2COR A;  2D8Y A;  2LZU A;  2XQN T; 
#chains in the Genus database with same CATH homology
 2KBX B;  5LKT A;  1RUT X;  1U5S B;  1CXX A;  2CO8 A;  1QLI A;  3AVR A;  2D8Z A;  2XJY A;  5FY0 A;  2XJZ A;  1V6G A;  2O10 A;  1CTL A;  2CU8 A;  2XUE A;  2YPA C;  2CUQ A;  3NIM A;  3NIS A;  1B8T A;  4UF0 A;  1IML A;  2EGQ A;  5LKX A;  3NIL A;  4EYU A;  2IYB E;  3NIN A;  1X63 A;  3NIH A;  4BHW A;  2D8X A;  1M3V A;  4HI9 B;  4JCJ A;  3F6Q B;  3NIK A;  1A7I A;  5FY7 A;  3AVS A;  3ZPO A;  5FY1 A;  5FXV A;  2CUR A;  4UF0 B;  5A1L A;  2DFY C;  2MIU A;  2L6Y B;  2DLO A;  3IXE B;  2EHE A;  1X64 A;  1NYP A;  1X68 A;  5FXZ A;  2LXD A;  1X4L A;  2MBV A;  2L4Z A;  4KFZ A;  2JTN A;  5FP3 A;  5FXW A;  3NIJ A;  5FYM A;  2DJ7 A;  2DAR A;  5FXX A;  4ASK A;  1IBI A;  1WYH A;  4HI8 B;  3ZLI A;  1X6A A;  4EZH A;  1J2O A;  1G47 A;  1X3H A;  2CUP A;  4EZ4 A;  3MMK A;  5LKZ A;  1X62 A;  2O13 A;  1WIG A;  5LKU A;  2L6Z C;  1X61 A;  2COR A;  2D8Y A;  2LZU A;  2XQN T; 
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