1XKP | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	121
structure length	119
Chain Sequence	SWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGATLTLWLARSLAWHRCEDAMVALTLTAAQSGALPLRAGWLGESQLVLFVSLDERSLTLPLLHQAFEQLLRLQQEVLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 119 atoms

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119 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Three-dimensional structure of a macromolecular assembly that regulates type III secretion in Yersinia pestis. pubmed doi rcsb
molecule keywords	putative membrane-bound Yop targeting protein YopN
molecule tags	Membrane protein/chaperon
source organism	Yersinia pestis
total genus	32
structure length	119
sequence length	121
ec nomenclature
pdb deposition date	2004-09-29

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.10	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	1xkpB00

1S28A 1JYAA 1N5BA 4GF3A 3KXYA 1K6ZA 3CXJA 4AKXA 4JMFB 4G6TA 1RY9A 2BSJA 1K3EA 2BSIA 1L2WA 1JYOA 2FM8A 1TTWA 3EPUA 2PLGA 2BSHA 1XKPC 2BHOA 3TU3A 1XKPB 1K3SA 2XGAA
chains in the Genus database with same CATH superfamily

2P9KF 3DWLD 3DWLF 1S28A 2P9KD 1JYAA 3DXKD 3DXKF 2P9PD 1N5BA 2P9UF 2P9PF 2P9UD 3DXMF 3DXMD 3KXYA 4GF3A 1K8KF 1K8KD 1K6ZA 3ULED 3RSED 3CXJA 3RSEF 3ULEF 2P9SD 2P9SF 4GSLC 2P9IF 2P9ID 3UKUD 4JMFB 4AKXA 2DYTA 4G6TA 1RY9A 2OD0A 2BSJA 2MQDA 3UKUF 4H5BA 3VX8B 1K3EA 3UKRF 2BSIA 1L2WA 4JD2D 4JD2F 3UKRD 4EBRA 1JYOA 2P9LF 2FM8A 1TTWA 2P9LD 4XEID 4XEIF 3VX7B 3EPUA 2PLGA 2P9ND 2P9NF 2BSHA 1TYQF 1XKPC 2LPUA 1U2VF 1U2VD 2BHOA 1XKPB 1TYQD 3TU3A 1K3SA 2XGAA 2KC5A
chains in the Genus database with same CATH topology

2P9KF 3DWLD 3DWLF 1S28A 2P9KD 1JYAA 3DXKD 3DXKF 2P9PD 1N5BA 2P9UF 2P9PF 2P9UD 3DXMF 3DXMD 3KXYA 4GF3A 1K8KF 1K8KD 1K6ZA 3ULED 3RSED 3CXJA 3RSEF 3ULEF 2P9SD 2P9SF 4GSLC 2P9IF 2P9ID 3UKUD 4JMFB 4AKXA 2DYTA 4G6TA 1RY9A 2BSJA 2MQDA 3UKUF 4H5BA 3VX8B 1K3EA 3UKRF 2BSIA 1L2WA 4JD2D 4JD2F 3UKRD 4EBRA 1JYOA 2P9LF 2FM8A 1TTWA 2P9LD 4XEID 4XEIF 3VX7B 3EPUA 2PLGA 2P9ND 2P9NF 2BSHA 1TYQF 1XKPC 2LPUA 1U2VF 1U2VD 2BHOA 1XKPB 1TYQD 3TU3A 1K3SA 2XGAA 2KC5A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1S28 A;  1JYA A;  1N5B A;  4GF3 A;  3KXY A;  1K6Z A;  3CXJ A;  4AKX A;  4JMF B;  4G6T A;  1RY9 A;  2BSJ A;  1K3E A;  2BSI A;  1L2W A;  1JYO A;  2FM8 A;  1TTW A;  3EPU A;  2PLG A;  2BSH A;  1XKP C;  2BHO A;  3TU3 A;  1XKP B;  1K3S A;  2XGA A; 
#chains in the Genus database with same CATH topology
 2P9K F;  3DWL D;  3DWL F;  1S28 A;  2P9K D;  1JYA A;  3DXK D;  3DXK F;  2P9P D;  1N5B A;  2P9U F;  2P9P F;  2P9U D;  3DXM F;  3DXM D;  3KXY A;  4GF3 A;  1K8K F;  1K8K D;  1K6Z A;  3ULE D;  3RSE D;  3CXJ A;  3RSE F;  3ULE F;  2P9S D;  2P9S F;  4GSL C;  2P9I F;  2P9I D;  3UKU D;  4JMF B;  4AKX A;  2DYT A;  4G6T A;  1RY9 A;  2OD0 A;  2BSJ A;  2MQD A;  3UKU F;  4H5B A;  3VX8 B;  1K3E A;  3UKR F;  2BSI A;  1L2W A;  4JD2 D;  4JD2 F;  3UKR D;  4EBR A;  1JYO A;  2P9L F;  2FM8 A;  1TTW A;  2P9L D;  4XEI D;  4XEI F;  3VX7 B;  3EPU A;  2PLG A;  2P9N D;  2P9N F;  2BSH A;  1TYQ F;  1XKP C;  2LPU A;  1U2V F;  1U2V D;  2BHO A;  1XKP B;  1TYQ D;  3TU3 A;  1K3S A;  2XGA A;  2KC5 A; 
#chains in the Genus database with same CATH homology
 2P9K F;  3DWL D;  3DWL F;  1S28 A;  2P9K D;  1JYA A;  3DXK D;  3DXK F;  2P9P D;  1N5B A;  2P9U F;  2P9P F;  2P9U D;  3DXM F;  3DXM D;  3KXY A;  4GF3 A;  1K8K F;  1K8K D;  1K6Z A;  3ULE D;  3RSE D;  3CXJ A;  3RSE F;  3ULE F;  2P9S D;  2P9S F;  4GSL C;  2P9I F;  2P9I D;  3UKU D;  4JMF B;  4AKX A;  2DYT A;  4G6T A;  1RY9 A;  2BSJ A;  2MQD A;  3UKU F;  4H5B A;  3VX8 B;  1K3E A;  3UKR F;  2BSI A;  1L2W A;  4JD2 D;  4JD2 F;  3UKR D;  4EBR A;  1JYO A;  2P9L F;  2FM8 A;  1TTW A;  2P9L D;  4XEI D;  4XEI F;  3VX7 B;  3EPU A;  2PLG A;  2P9N D;  2P9N F;  2BSH A;  1TYQ F;  1XKP C;  2LPU A;  1U2V F;  1U2V D;  2BHO A;  1XKP B;  1TYQ D;  3TU3 A;  1K3S A;  2XGA A;  2KC5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1XKPB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN