1CTLA

Structure of the carboxy-terminal lim domain from the cysteine rich protein crp
Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
85
structure length
85
Chain Sequence
MAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHSQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (9-11)TI1 (12-15)S4 (29-32)TIV2 (11-14)TIV6 (32-35)EMPTYTIV7 (33-36)TIV8 (38-41)TI2 (46-49)TI3 (59-62)S5 (50-53)S6 (56-59)TIV11 (60-63)TIV13 (62-65)TIV14 (63-66)TIV12 (61-64)TIV15 (64-67)O1 (73-75)S2 (16-18)S3 (23-26)Updating...
connected with : NaN
molecule tags Metal binding protein
source organism Gallus gallus
publication title Structure of the carboxy-terminal LIM domain from the cysteine rich protein CRP.
pubmed doi rcsb
molecule keywords AVIAN CYSTEINE RICH PROTEIN
total genus 5
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 1995-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 1ctlA00
2L4ZA 1CXXA 3F6QB 2JTNA 1J2OA 2CUPA 2DFYC 4HI8B 1V6GA 2DLOA 1U5SB 2XJZA 1QLIA 2D8ZA 1X6AA 1WYHA 2IYBE 2O13A 2CO8A 2DJ7A 1M3VA 1X68A 2XJYA 2CU8A 2CUQA 1X62A 1WIGA 1NYPA 4HI9B 1A7IA 2MIUA 1G47A 1X3HA 2D8YA 2CURA 1X61A 2CORA 2LZUA 4KFZA 1X63A 3IXEB 1IBIA 4JCJA 2KBXB 3MMKA 2D8XA 1IMLA 2XQNT 2YPAC 1RUTX 1X64A 2O10A 1CTLA 2L6ZC 2DARA 2L6YB 2EHEA 2LXDA 2MBVA 1X4LA 2EGQA 1B8TA
chains in the Genus database with same CATH superfamily
1CXXA 2JTNA 1J2OA 1QLIA 3AVSA 5FXZA 1M3VA 2XUEA 4EZ4A 3NIJA 3ZPOA 1X63A 5FXVA 2O10A 5FXWA 2DARA 1X4LA 3F6QB 3AVRA 4HI8B 2DLOA 1U5SB 4ASKA 2IYBE 5FXXA 3NINA 2XJYA 2CU8A 5LKZA 1NYPA 1A7IA 2CURA 4UF0A 3NIHA 3NISA 5A1LA 4EYUA 1IMLA 1CTLA 5FY7A 5FY0A 2MBVA 3NIKA 2CUPA 2DFYC 2XJZA 1WYHA 5LKXA 5LKTA 1G47A 1X3HA 1X61A 2CORA 2LZUA 3IXEB 4UF0B 1RUTX 2L6ZC 2L6YB 2LXDA 2L4ZA 4EZHA 1V6GA 2D8ZA 1X6AA 2O13A 2CO8A 2DJ7A 1X68A 2CUQA 1X62A 1WIGA 4HI9B 2MIUA 2D8YA 5LKUA 4KFZA 4BHWA 3NILA 1IBIA 4JCJA 2KBXB 3MMKA 5FP3A 2D8XA 2XQNT 2YPAC 1X64A 5FY1A 3ZLIA 2EHEA 5FYMA 3NIMA 2EGQA 1B8TA
chains in the Genus database with same CATH topology
1CXXA 2JTNA 1J2OA 1QLIA 3AVSA 5FXZA 1M3VA 2XUEA 4EZ4A 3NIJA 3ZPOA 1X63A 5FXVA 2O10A 5FXWA 2DARA 1X4LA 3F6QB 3AVRA 4HI8B 2DLOA 1U5SB 4ASKA 2IYBE 5FXXA 3NINA 2XJYA 2CU8A 5LKZA 1NYPA 1A7IA 2CURA 4UF0A 3NIHA 3NISA 5A1LA 4EYUA 1IMLA 1CTLA 5FY7A 5FY0A 2MBVA 3NIKA 2CUPA 2DFYC 2XJZA 1WYHA 5LKXA 5LKTA 1G47A 1X3HA 1X61A 2CORA 2LZUA 3IXEB 4UF0B 1RUTX 2L6ZC 2L6YB 2LXDA 2L4ZA 4EZHA 1V6GA 2D8ZA 1X6AA 2O13A 2CO8A 2DJ7A 1X68A 2CUQA 1X62A 1WIGA 4HI9B 2MIUA 2D8YA 5LKUA 4KFZA 4BHWA 3NILA 1IBIA 4JCJA 2KBXB 3MMKA 5FP3A 2D8XA 2XQNT 2YPAC 1X64A 5FY1A 3ZLIA 2EHEA 5FYMA 3NIMA 2EGQA 1B8TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L4Z A;  1CXX A;  3F6Q B;  2JTN A;  1J2O A;  2CUP A;  2DFY C;  4HI8 B;  1V6G A;  2DLO A;  1U5S B;  2XJZ A;  1QLI A;  2D8Z A;  1X6A A;  1WYH A;  2IYB E;  2O13 A;  2CO8 A;  2DJ7 A;  1M3V A;  1X68 A;  2XJY A;  2CU8 A;  2CUQ A;  1X62 A;  1WIG A;  1NYP A;  4HI9 B;  1A7I A;  2MIU A;  1G47 A;  1X3H A;  2D8Y A;  2CUR A;  1X61 A;  2COR A;  2LZU A;  4KFZ A;  1X63 A;  3IXE B;  1IBI A;  4JCJ A;  2KBX B;  3MMK A;  2D8X A;  1IML A;  2XQN T;  2YPA C;  1RUT X;  1X64 A;  2O10 A;  1CTL A;  2L6Z C;  2DAR A;  2L6Y B;  2EHE A;  2LXD A;  2MBV A;  1X4L A;  2EGQ A;  1B8T A; 
#chains in the Genus database with same CATH topology
 1CXX A;  2JTN A;  1J2O A;  1QLI A;  3AVS A;  5FXZ A;  1M3V A;  2XUE A;  4EZ4 A;  3NIJ A;  3ZPO A;  1X63 A;  5FXV A;  2O10 A;  5FXW A;  2DAR A;  1X4L A;  3F6Q B;  3AVR A;  4HI8 B;  2DLO A;  1U5S B;  4ASK A;  2IYB E;  5FXX A;  3NIN A;  2XJY A;  2CU8 A;  5LKZ A;  1NYP A;  1A7I A;  2CUR A;  4UF0 A;  3NIH A;  3NIS A;  5A1L A;  4EYU A;  1IML A;  1CTL A;  5FY7 A;  5FY0 A;  2MBV A;  3NIK A;  2CUP A;  2DFY C;  2XJZ A;  1WYH A;  5LKX A;  5LKT A;  1G47 A;  1X3H A;  1X61 A;  2COR A;  2LZU A;  3IXE B;  4UF0 B;  1RUT X;  2L6Z C;  2L6Y B;  2LXD A;  2L4Z A;  4EZH A;  1V6G A;  2D8Z A;  1X6A A;  2O13 A;  2CO8 A;  2DJ7 A;  1X68 A;  2CUQ A;  1X62 A;  1WIG A;  4HI9 B;  2MIU A;  2D8Y A;  5LKU A;  4KFZ A;  4BHW A;  3NIL A;  1IBI A;  4JCJ A;  2KBX B;  3MMK A;  5FP3 A;  2D8X A;  2XQN T;  2YPA C;  1X64 A;  5FY1 A;  3ZLI A;  2EHE A;  5FYM A;  3NIM A;  2EGQ A;  1B8T A; 
#chains in the Genus database with same CATH homology
 1CXX A;  2JTN A;  1J2O A;  1QLI A;  3AVS A;  5FXZ A;  1M3V A;  2XUE A;  4EZ4 A;  3NIJ A;  3ZPO A;  1X63 A;  5FXV A;  2O10 A;  5FXW A;  2DAR A;  1X4L A;  3F6Q B;  3AVR A;  4HI8 B;  2DLO A;  1U5S B;  4ASK A;  2IYB E;  5FXX A;  3NIN A;  2XJY A;  2CU8 A;  5LKZ A;  1NYP A;  1A7I A;  2CUR A;  4UF0 A;  3NIH A;  3NIS A;  5A1L A;  4EYU A;  1IML A;  1CTL A;  5FY7 A;  5FY0 A;  2MBV A;  3NIK A;  2CUP A;  2DFY C;  2XJZ A;  1WYH A;  5LKX A;  5LKT A;  1G47 A;  1X3H A;  1X61 A;  2COR A;  2LZU A;  3IXE B;  4UF0 B;  1RUT X;  2L6Z C;  2L6Y B;  2LXD A;  2L4Z A;  4EZH A;  1V6G A;  2D8Z A;  1X6A A;  2O13 A;  2CO8 A;  2DJ7 A;  1X68 A;  2CUQ A;  1X62 A;  1WIG A;  4HI9 B;  2MIU A;  2D8Y A;  5LKU A;  4KFZ A;  4BHW A;  3NIL A;  1IBI A;  4JCJ A;  2KBX B;  3MMK A;  5FP3 A;  2D8X A;  2XQN T;  2YPA C;  1X64 A;  5FY1 A;  3ZLI A;  2EHE A;  5FYM A;  3NIM A;  2EGQ A;  1B8T A; 
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