1DTK | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	57
structure length	57
Chain Sequence	AAKYCKLPLRIGPCKRKIPSFYYKWKAKQCLPFDYSGCGGNANRFKTIEECRRTCVG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Presynaptic neurotoxin
source organism	Dendroaspis polylepis polylepis
publication title	Nuclear magnetic resonance solution structure of dendrotoxin K from the venom of Dendroaspis polylepis polylepis. pubmed doi rcsb
molecule keywords	DENDROTOXIN K
total genus	13
structure length	57
sequence length	57
ec nomenclature
pdb deposition date	1993-04-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00014	Kunitz_BPTI	Kunitz/Bovine pancreatic trypsin inhibitor domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.410.10	Few Secondary Structures	Irregular	Factor Xa Inhibitor	Pancreatic trypsin inhibitor Kunitz domain	1dtkA00

1P2II 1TOCR 3BTGI 1T8LB 1CA0D 2LFLA 2DDJA 4ISNB 2FI5I 3TGKI 4Y0ZI 4U32X 1P2MB 4U30W 1P2JI 2CA7A 3BTQI 1ZJDB 1B0CA 3LDMA 1EAWB 3U1JE 6PTIA 1P2KI 5JB4A 2KAII 1DTXA 1YLCB 1CO7I 2TGPI 7PTIA 1ADZA 2FI3I 1DTKA 1T8MB 2HEXA 3AUCA 4BD9B 4BQDA 2R9PE 1JC6A 3BTMI 1Y62A 4NTYB 1ZR0B 1DENA 3BTEI 3BYBA 2RA3C 3TGJI 3OFWA 2W8XA 3UOUB 3BTKI 1FY8I 3AUIA 5JB7A 1P2NB 1YKTB 1T7CB 3AUEA 1OA55 4PTIA 2J6DA 2JOTA 3M7QB 2PTCI 1UUAA 1BUNB 1TPAI 1T8NB 1PITA 1P2QB 3P92E 3AUGA 1AALA 1BZ5A 3CI7A 3BTFI 4Y0YI 1K6UA 5PTIA 1KUNA 3UIRC 1T8OB 2M99A 1OA65 2ZVXA 1JV8A 3AUDA 3WNYA 2TPII 4WWYC 4Y10I 1KNTA 3AUHA 1YLDB 3BTHI 1YC0I 1F5RI 4DG4C 5C67C 3AUBA 3BTTI 3BTDI 1BIKA 3FP7J 2UUXA 2M01A 1UUBA 3D65I 5JB6A 1D0DA 1AAPA 3L3TE 1KIGI 1QLQA 1JV9A 4NTWB 1FAKI 2FI4I 1BTHP 1F7ZI 1TAPA 1NAGA 1EJMB 3OTJI 4TPII 2FTMB 1TFXC 3BTWI 4WXVC 2KCRA 2ZJXA 1G6XA 3GYMI 4ISOB 3LDIA 1BF0A 1BHCA 3T62D 1BTIA 1KTHA 1DEMA 1BPIA 1TAWB 4ISLB 1LD5A 3L33E 2DDIA 2IJOI 3TGII 1CBWD 9PTIA 1BRCI 1D0DB 2UUYB 3FP6I 1IRHA 1BPTA 1FANA 4Y11I 4BNRI 3FP8I 1MTND 2KNTA 4DTGK 1BZXI 1LD6A 1BRBI 1P2OB 5JB5A 8PTIA 1TCPA 4NTXB 3TPII 3LDJA 2LFKA 3P95E 2FTLI 2ODYE 1SHPA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1P2I I;  1TOC R;  3BTG I;  1T8L B;  1CA0 D;  2LFL A;  2DDJ A;  4ISN B;  2FI5 I;  3TGK I;  4Y0Z I;  4U32 X;  1P2M B;  4U30 W;  1P2J I;  2CA7 A;  3BTQ I;  1ZJD B;  1B0C A;  3LDM A;  1EAW B;  3U1J E;  6PTI A;  1P2K I;  5JB4 A;  2KAI I;  1DTX A;  1YLC B;  1CO7 I;  2TGP I;  7PTI A;  1ADZ A;  2FI3 I;  1DTK A;  1T8M B;  2HEX A;  3AUC A;  4BD9 B;  4BQD A;  2R9P E;  1JC6 A;  3BTM I;  1Y62 A;  4NTY B;  1ZR0 B;  1DEN A;  3BTE I;  3BYB A;  2RA3 C;  3TGJ I;  3OFW A;  2W8X A;  3UOU B;  3BTK I;  1FY8 I;  3AUI A;  5JB7 A;  1P2N B;  1YKT B;  1T7C B;  3AUE A;  1OA5 5;  4PTI A;  2J6D A;  2JOT A;  3M7Q B;  2PTC I;  1UUA A;  1BUN B;  1TPA I;  1T8N B;  1PIT A;  1P2Q B;  3P92 E;  3AUG A;  1AAL A;  1BZ5 A;  3CI7 A;  3BTF I;  4Y0Y I;  1K6U A;  5PTI A;  1KUN A;  3UIR C;  1T8O B;  2M99 A;  1OA6 5;  2ZVX A;  1JV8 A;  3AUD A;  3WNY A;  2TPI I;  4WWY C;  4Y10 I;  1KNT A;  3AUH A;  1YLD B;  3BTH I;  1YC0 I;  1F5R I;  4DG4 C;  5C67 C;  3AUB A;  3BTT I;  3BTD I;  1BIK A;  3FP7 J;  2UUX A;  2M01 A;  1UUB A;  3D65 I;  5JB6 A;  1D0D A;  1AAP A;  3L3T E;  1KIG I;  1QLQ A;  1JV9 A;  4NTW B;  1FAK I;  2FI4 I;  1BTH P;  1F7Z I;  1TAP A;  1NAG A;  1EJM B;  3OTJ I;  4TPI I;  2FTM B;  1TFX C;  3BTW I;  4WXV C;  2KCR A;  2ZJX A;  1G6X A;  3GYM I;  4ISO B;  3LDI A;  1BF0 A;  1BHC A;  3T62 D;  1BTI A;  1KTH A;  1DEM A;  1BPI A;  1TAW B;  4ISL B;  1LD5 A;  3L33 E;  2DDI A;  2IJO I;  3TGI I;  1CBW D;  9PTI A;  1BRC I;  1D0D B;  2UUY B;  3FP6 I;  1IRH A;  1BPT A;  1FAN A;  4Y11 I;  4BNR I;  3FP8 I;  1MTN D;  2KNT A;  4DTG K;  1BZX I;  1LD6 A;  1BRB I;  1P2O B;  5JB5 A;  8PTI A;  1TCP A;  4NTX B;  3TPI I;  3LDJ A;  2LFK A;  3P95 E;  2FTL I;  2ODY E;  1SHP A; 
#chains in the Genus database with same CATH topology
 1P2I I;  1TOC R;  3BTG I;  1T8L B;  1CA0 D;  2LFL A;  2DDJ A;  4ISN B;  2FI5 I;  3TGK I;  4Y0Z I;  4U32 X;  1P2M B;  4U30 W;  1P2J I;  2CA7 A;  3BTQ I;  1ZJD B;  1B0C A;  3LDM A;  1EAW B;  3U1J E;  6PTI A;  1P2K I;  5JB4 A;  2KAI I;  1DTX A;  1YLC B;  1CO7 I;  2TGP I;  7PTI A;  1ADZ A;  2FI3 I;  1DTK A;  1T8M B;  2HEX A;  3AUC A;  4BD9 B;  4BQD A;  2R9P E;  1JC6 A;  3BTM I;  1Y62 A;  4NTY B;  1ZR0 B;  1DEN A;  3BTE I;  3BYB A;  2RA3 C;  3TGJ I;  3OFW A;  2W8X A;  3UOU B;  3BTK I;  1FY8 I;  3AUI A;  5JB7 A;  1P2N B;  1YKT B;  1T7C B;  3AUE A;  1OA5 5;  4PTI A;  2J6D A;  2JOT A;  3M7Q B;  2PTC I;  1UUA A;  1BUN B;  1TPA I;  1T8N B;  1PIT A;  1P2Q B;  3P92 E;  3AUG A;  1AAL A;  1BZ5 A;  3CI7 A;  3BTF I;  4Y0Y I;  1K6U A;  5PTI A;  1KUN A;  3UIR C;  1T8O B;  2M99 A;  1OA6 5;  2ZVX A;  1JV8 A;  3AUD A;  3WNY A;  2TPI I;  4WWY C;  4Y10 I;  1KNT A;  3AUH A;  1YLD B;  3BTH I;  1YC0 I;  1F5R I;  4DG4 C;  5C67 C;  3AUB A;  3BTT I;  3BTD I;  1BIK A;  3FP7 J;  2UUX A;  2M01 A;  1UUB A;  3D65 I;  5JB6 A;  1D0D A;  1AAP A;  3L3T E;  1KIG I;  1QLQ A;  1JV9 A;  4NTW B;  1FAK I;  2FI4 I;  1BTH P;  1F7Z I;  1TAP A;  1NAG A;  1EJM B;  3OTJ I;  4TPI I;  2FTM B;  1TFX C;  3BTW I;  4WXV C;  2KCR A;  2ZJX A;  1G6X A;  3GYM I;  4ISO B;  3LDI A;  1BF0 A;  1BHC A;  3T62 D;  1BTI A;  1KTH A;  1DEM A;  1BPI A;  1TAW B;  4ISL B;  1LD5 A;  3L33 E;  2DDI A;  2IJO I;  3TGI I;  1CBW D;  9PTI A;  1BRC I;  1D0D B;  2UUY B;  3FP6 I;  1IRH A;  1BPT A;  1FAN A;  4Y11 I;  4BNR I;  3FP8 I;  1MTN D;  2KNT A;  4DTG K;  1BZX I;  1LD6 A;  1BRB I;  1P2O B;  5JB5 A;  8PTI A;  1TCP A;  4NTX B;  3TPI I;  3LDJ A;  2LFK A;  3P95 E;  2FTL I;  2ODY E;  1SHP A; 
#chains in the Genus database with same CATH homology
 1P2I I;  1TOC R;  3BTG I;  1T8L B;  1CA0 D;  2LFL A;  2DDJ A;  4ISN B;  2FI5 I;  3TGK I;  4Y0Z I;  4U32 X;  1P2M B;  4U30 W;  1P2J I;  2CA7 A;  3BTQ I;  1ZJD B;  1B0C A;  3LDM A;  1EAW B;  3U1J E;  6PTI A;  1P2K I;  5JB4 A;  2KAI I;  1DTX A;  1YLC B;  1CO7 I;  2TGP I;  7PTI A;  1ADZ A;  2FI3 I;  1DTK A;  1T8M B;  2HEX A;  3AUC A;  4BD9 B;  4BQD A;  2R9P E;  1JC6 A;  3BTM I;  1Y62 A;  4NTY B;  1ZR0 B;  1DEN A;  3BTE I;  3BYB A;  2RA3 C;  3TGJ I;  3OFW A;  2W8X A;  3UOU B;  3BTK I;  1FY8 I;  3AUI A;  5JB7 A;  1P2N B;  1YKT B;  1T7C B;  3AUE A;  1OA5 5;  4PTI A;  2J6D A;  2JOT A;  3M7Q B;  2PTC I;  1UUA A;  1BUN B;  1TPA I;  1T8N B;  1PIT A;  1P2Q B;  3P92 E;  3AUG A;  1AAL A;  1BZ5 A;  3CI7 A;  3BTF I;  4Y0Y I;  1K6U A;  5PTI A;  1KUN A;  3UIR C;  1T8O B;  2M99 A;  1OA6 5;  2ZVX A;  1JV8 A;  3AUD A;  3WNY A;  2TPI I;  4WWY C;  4Y10 I;  1KNT A;  3AUH A;  1YLD B;  3BTH I;  1YC0 I;  1F5R I;  4DG4 C;  5C67 C;  3AUB A;  3BTT I;  3BTD I;  1BIK A;  3FP7 J;  2UUX A;  2M01 A;  1UUB A;  3D65 I;  5JB6 A;  1D0D A;  1AAP A;  3L3T E;  1KIG I;  1QLQ A;  1JV9 A;  4NTW B;  1FAK I;  2FI4 I;  1BTH P;  1F7Z I;  1TAP A;  1NAG A;  1EJM B;  3OTJ I;  4TPI I;  2FTM B;  1TFX C;  3BTW I;  4WXV C;  2KCR A;  2ZJX A;  1G6X A;  3GYM I;  4ISO B;  3LDI A;  1BF0 A;  1BHC A;  3T62 D;  1BTI A;  1KTH A;  1DEM A;  1BPI A;  1TAW B;  4ISL B;  1LD5 A;  3L33 E;  2DDI A;  2IJO I;  3TGI I;  1CBW D;  9PTI A;  1BRC I;  1D0D B;  2UUY B;  3FP6 I;  1IRH A;  1BPT A;  1FAN A;  4Y11 I;  4BNR I;  3FP8 I;  1MTN D;  2KNT A;  4DTG K;  1BZX I;  1LD6 A;  1BRB I;  1P2O B;  5JB5 A;  8PTI A;  1TCP A;  4NTX B;  3TPI I;  3LDJ A;  2LFK A;  3P95 E;  2FTL I;  2ODY E;  1SHP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1DTKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations