1ITV | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	195
structure length	195
Chain Sequence	DDACNVNIFDAIAEIGNQLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGRQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRRLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQFREKAYFCQDRFYWRVSSRSELNQVDQVGYVTYDILQCPED

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 195 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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195 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Homo sapiens
publication title	Structural basis of the adaptive molecular recognition by MMP9. pubmed doi rcsb
molecule keywords	MMP9
total genus	31
structure length	195
sequence length	195
chains with identical sequence	B
ec nomenclature	ec 3.4.24.35: Gelatinase B.
pdb deposition date	2002-02-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00045	Hemopexin	Hemopexin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.110.10.10	Mainly Beta	4 Propeller	Hemopexin	Hemopexin-like domain	1itvA00

1PEXA 2JXYA 1QJSA 1ITVA 3BA0A 1QHUA 3S18A 4FU4A 4LL2A 1SU3A 4RT6B 3OYOA 2MQSA 4YEHA 1GENA 3LP9A 4OEIA 3C7XA 1RTGA 2CLTA 1GXDA 1FBLA 3V6NA 4AUOA 4HSDA 1HXNA 4G0DA 1CK7A 4FVLA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1PEX A;  2JXY A;  1QJS A;  1ITV A;  3BA0 A;  1QHU A;  3S18 A;  4FU4 A;  4LL2 A;  1SU3 A;  4RT6 B;  3OYO A;  2MQS A;  4YEH A;  1GEN A;  3LP9 A;  4OEI A;  3C7X A;  1RTG A;  2CLT A;  1GXD A;  1FBL A;  3V6N A;  4AUO A;  4HSD A;  1HXN A;  4G0D A;  1CK7 A;  4FVL A; 
#chains in the Genus database with same CATH topology
 1PEX A;  2JXY A;  1QJS A;  1ITV A;  3BA0 A;  1QHU A;  3S18 A;  4FU4 A;  4LL2 A;  1SU3 A;  4RT6 B;  3OYO A;  2MQS A;  4YEH A;  1GEN A;  3LP9 A;  4OEI A;  3C7X A;  1RTG A;  2CLT A;  1GXD A;  1FBL A;  3V6N A;  4AUO A;  4HSD A;  1HXN A;  4G0D A;  1CK7 A;  4FVL A; 
#chains in the Genus database with same CATH homology
 1PEX A;  2JXY A;  1QJS A;  1ITV A;  3BA0 A;  1QHU A;  3S18 A;  4FU4 A;  4LL2 A;  1SU3 A;  4RT6 B;  3OYO A;  2MQS A;  4YEH A;  1GEN A;  3LP9 A;  4OEI A;  3C7X A;  1RTG A;  2CLT A;  1GXD A;  1FBL A;  3V6N A;  4AUO A;  4HSD A;  1HXN A;  4G0D A;  1CK7 A;  4FVL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1ITVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations