4RT6B

Structure of a complex between hemopexin and hemopexin binding protein
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
185
structure length
172
Chain Sequence
IEQCSDGWSFDATTLDDNGTMLFFKDEFVWKSHRISERWKNFIGPVDAAFRHTSVYLIKGDKVWVYTSYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKWFWDLTTGTKKERSWPAVGNCTSALRWLGRYYCFQGNQFLRFNPVSGEVPPGYPLDVRDYFLSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for haem piracy from host haemopexin by Haemophilus influenzae.
pubmed doi rcsb
molecule tags Protein binding
source organism Haemophilus influenzae rd kw20
molecule keywords Heme/hemopexin-binding protein
total genus 28
structure length 172
sequence length 185
ec nomenclature
pdb deposition date 2014-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00045 Hemopexin Hemopexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 4rt6B00
1HXNA 1PEXA 3BA0A 4G0DA 1SU3A 2CLTA 4OEIA 3C7XA 4YEHA 2JXYA 1ITVA 1FBLA 1CK7A 2MQSA 1RTGA 3OYOA 1GENA 4RT6B 3LP9A 1QJSA 4LL2A 4FU4A 4HSDA 3S18A 4FVLA 3V6NA 1GXDA 4AUOA 1QHUA
chains in the Genus database with same CATH superfamily
1HXNA 1PEXA 3BA0A 4G0DA 1SU3A 2CLTA 4OEIA 3C7XA 4YEHA 2JXYA 1ITVA 1FBLA 1CK7A 2MQSA 1RTGA 3OYOA 1GENA 4RT6B 3LP9A 1QJSA 4LL2A 4FU4A 4HSDA 3S18A 4FVLA 3V6NA 1GXDA 4AUOA 1QHUA
chains in the Genus database with same CATH topology
1HXNA 1PEXA 3BA0A 4G0DA 1SU3A 2CLTA 4OEIA 3C7XA 4YEHA 2JXYA 1ITVA 1FBLA 1CK7A 2MQSA 1RTGA 3OYOA 1GENA 4RT6B 3LP9A 1QJSA 4LL2A 4FU4A 4HSDA 3S18A 4FVLA 3V6NA 1GXDA 4AUOA 1QHUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HXN A;  1PEX A;  3BA0 A;  4G0D A;  1SU3 A;  2CLT A;  4OEI A;  3C7X A;  4YEH A;  2JXY A;  1ITV A;  1FBL A;  1CK7 A;  2MQS A;  1RTG A;  3OYO A;  1GEN A;  4RT6 B;  3LP9 A;  1QJS A;  4LL2 A;  4FU4 A;  4HSD A;  3S18 A;  4FVL A;  3V6N A;  1GXD A;  4AUO A;  1QHU A; 
#chains in the Genus database with same CATH topology
 1HXN A;  1PEX A;  3BA0 A;  4G0D A;  1SU3 A;  2CLT A;  4OEI A;  3C7X A;  4YEH A;  2JXY A;  1ITV A;  1FBL A;  1CK7 A;  2MQS A;  1RTG A;  3OYO A;  1GEN A;  4RT6 B;  3LP9 A;  1QJS A;  4LL2 A;  4FU4 A;  4HSD A;  3S18 A;  4FVL A;  3V6N A;  1GXD A;  4AUO A;  1QHU A; 
#chains in the Genus database with same CATH homology
 1HXN A;  1PEX A;  3BA0 A;  4G0D A;  1SU3 A;  2CLT A;  4OEI A;  3C7X A;  4YEH A;  2JXY A;  1ITV A;  1FBL A;  1CK7 A;  2MQS A;  1RTG A;  3OYO A;  1GEN A;  4RT6 B;  3LP9 A;  1QJS A;  4LL2 A;  4FU4 A;  4HSD A;  3S18 A;  4FVL A;  3V6N A;  1GXD A;  4AUO A;  1QHU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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