2BSI | Genus

Total Genus 26

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	114
structure length	114
Chain Sequence	MGQTTFTELMQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKSILWSQQSLVGLDIDEMQAWLERFIDDIEQRKE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structure of Yersinia Enterocolitica Type III Secretion Chaperone Syct. pubmed doi rcsb
molecule keywords	YOPT CHAPERONE SYCT
molecule tags	Chaperone
source organism	Yersinia enterocolitica
total genus	26
structure length	114
sequence length	114
chains with identical sequence	B
ec nomenclature
pdb deposition date	2005-05-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05932	CesT	Tir chaperone protein (CesT) family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.10	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	2bsiA00

1TTWA 2BHOA 2XGAA 2BSHA 3EPUA 3TU3A 3CXJA 1K3EA 1N5BA 4G6TA 1L2WA 1S28A 1K3SA 1JYOA 1XKPC 2BSIA 1JYAA 2BSJA 1XKPB 4AKXA 4JMFB 1K6ZA 2PLGA 4GF3A 3KXYA 2FM8A 1RY9A
chains in the Genus database with same CATH superfamily

4JD2F 4XEIF 4JD2D 1TTWA 4XEID 2BHOA 2XGAA 2BSHA 2P9SF 3EPUA 2P9SD 4GSLC 3UKRF 3UKRD 3TU3A 3RSEF 2P9PF 2P9NF 2P9KF 2P9ND 1K3EA 1N5BA 2P9KD 1L2WA 2P9IF 2P9PD 3CXJA 1S28A 3DWLD 3DXKD 3DXKF 3RSED 1K3SA 2P9ID 1JYOA 1XKPC 2OD0A 2BSIA 1U2VF 1U2VD 2P9LF 1JYAA 2BSJA 2P9LD 1XKPB 2P9UF 2P9UD 2KC5A 4AKXA 3VX7B 4EBRA 3DWLF 4JMFB 3VX8B 1K6ZA 4H5BA 3ULEF 3ULED 2PLGA 4GF3A 4G6TA 3KXYA 2LPUA 2FM8A 1TYQF 2DYTA 3DXMF 1TYQD 3DXMD 2MQDA 1RY9A 1K8KF 1K8KD 3UKUF 3UKUD
chains in the Genus database with same CATH topology

4JD2F 4XEIF 4JD2D 1TTWA 4XEID 2BHOA 2XGAA 2BSHA 2P9SF 3EPUA 2P9SD 4GSLC 3UKRF 3UKRD 3TU3A 3RSEF 2P9PF 2P9NF 2P9KF 2P9ND 1K3EA 1N5BA 2P9KD 1L2WA 2P9IF 2P9PD 3CXJA 1S28A 3DWLD 3DXKD 3DXKF 3RSED 1K3SA 2P9ID 1JYOA 1XKPC 2BSIA 1U2VF 1U2VD 2P9LF 1JYAA 2BSJA 2P9LD 1XKPB 2P9UF 2P9UD 2KC5A 4AKXA 3VX7B 4EBRA 3DWLF 4JMFB 3VX8B 1K6ZA 4H5BA 3ULEF 3ULED 2PLGA 4GF3A 4G6TA 3KXYA 2LPUA 2FM8A 1TYQF 2DYTA 3DXMF 1TYQD 3DXMD 2MQDA 1RY9A 1K8KF 1K8KD 3UKUF 3UKUD
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1TTW A;  2BHO A;  2XGA A;  2BSH A;  3EPU A;  3TU3 A;  3CXJ A;  1K3E A;  1N5B A;  4G6T A;  1L2W A;  1S28 A;  1K3S A;  1JYO A;  1XKP C;  2BSI A;  1JYA A;  2BSJ A;  1XKP B;  4AKX A;  4JMF B;  1K6Z A;  2PLG A;  4GF3 A;  3KXY A;  2FM8 A;  1RY9 A; 
#chains in the Genus database with same CATH topology
 4JD2 F;  4XEI F;  4JD2 D;  1TTW A;  4XEI D;  2BHO A;  2XGA A;  2BSH A;  2P9S F;  3EPU A;  2P9S D;  4GSL C;  3UKR F;  3UKR D;  3TU3 A;  3RSE F;  2P9P F;  2P9N F;  2P9K F;  2P9N D;  1K3E A;  1N5B A;  2P9K D;  1L2W A;  2P9I F;  2P9P D;  3CXJ A;  1S28 A;  3DWL D;  3DXK D;  3DXK F;  3RSE D;  1K3S A;  2P9I D;  1JYO A;  1XKP C;  2OD0 A;  2BSI A;  1U2V F;  1U2V D;  2P9L F;  1JYA A;  2BSJ A;  2P9L D;  1XKP B;  2P9U F;  2P9U D;  2KC5 A;  4AKX A;  3VX7 B;  4EBR A;  3DWL F;  4JMF B;  3VX8 B;  1K6Z A;  4H5B A;  3ULE F;  3ULE D;  2PLG A;  4GF3 A;  4G6T A;  3KXY A;  2LPU A;  2FM8 A;  1TYQ F;  2DYT A;  3DXM F;  1TYQ D;  3DXM D;  2MQD A;  1RY9 A;  1K8K F;  1K8K D;  3UKU F;  3UKU D; 
#chains in the Genus database with same CATH homology
 4JD2 F;  4XEI F;  4JD2 D;  1TTW A;  4XEI D;  2BHO A;  2XGA A;  2BSH A;  2P9S F;  3EPU A;  2P9S D;  4GSL C;  3UKR F;  3UKR D;  3TU3 A;  3RSE F;  2P9P F;  2P9N F;  2P9K F;  2P9N D;  1K3E A;  1N5B A;  2P9K D;  1L2W A;  2P9I F;  2P9P D;  3CXJ A;  1S28 A;  3DWL D;  3DXK D;  3DXK F;  3RSE D;  1K3S A;  2P9I D;  1JYO A;  1XKP C;  2BSI A;  1U2V F;  1U2V D;  2P9L F;  1JYA A;  2BSJ A;  2P9L D;  1XKP B;  2P9U F;  2P9U D;  2KC5 A;  4AKX A;  3VX7 B;  4EBR A;  3DWL F;  4JMF B;  3VX8 B;  1K6Z A;  4H5B A;  3ULE F;  3ULE D;  2PLG A;  4GF3 A;  4G6T A;  3KXY A;  2LPU A;  2FM8 A;  1TYQ F;  2DYT A;  3DXM F;  1TYQ D;  3DXM D;  2MQD A;  1RY9 A;  1K8K F;  1K8K D;  3UKU F;  3UKU D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2BSIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations