2BSJA

Native crystal structure of the type iii secretion chaperone syct from yersinia enterocolitica
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
128
structure length
128
Chain Sequence
TTFTELMQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKSILWSQQSLVGLDIDEMQAWLERFIDDIEQRKEPQNTKFQPNSTSPILFI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTI1 (23-26)S2 (36-43)S1 (27-33)S3 (47-56)TIV1 (33-36)S5 (80-88)TIV2 (42-45)TI'1 (43-46)S4 (72-77)TVIII1 (66-69)AH2 (94-112)TIV4 (68-71)TIV5 (76-79)TII1 (89-92)3H1 (114-117)AH1 (5-16)Updating...
connected with : NaN
publication title Crystal Structure of Yersinia Enterocolitica Type III Secretion Chaperone Syct.
pubmed doi rcsb
molecule keywords CHAPERONE PROTEIN SYCT
molecule tags Chaperone
source organism Yersinia enterocolitica
total genus 30
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05932 CesT Tir chaperone protein (CesT) family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.10 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 2bsjA00
3TU3A 3CXJA 1K6ZA 3EPUA 1S28A 4AKXA 4GF3A 2BSIA 1XKPB 1RY9A 1N5BA 1JYOA 2FM8A 1L2WA 3KXYA 2BSJA 2XGAA 2BHOA 1K3EA 4G6TA 1TTWA 4JMFB 1K3SA 2BSHA 1XKPC 2PLGA 1JYAA
chains in the Genus database with same CATH superfamily
2P9UD 2P9PD 3ULED 4EBRA 2P9ND 3TU3A 3CXJA 3ULEF 2P9UF 1K6ZA 2P9PF 3DWLD 2P9NF 3EPUA 4JD2D 1S28A 3UKUD 3DWLF 3UKUF 2OD0A 4JD2F 4AKXA 2MQDA 4GF3A 2BSIA 1XKPB 1RY9A 4H5BA 3VX7B 4GSLC 1N5BA 1TYQD 1JYOA 2FM8A 1L2WA 1U2VD 1TYQF 3DXMD 4XEID 2P9LD 2BSJA 3KXYA 3RSED 1U2VF 2XGAA 2P9LF 2KC5A 3DXMF 3RSEF 2BHOA 3UKRD 1K3EA 2P9SD 1K8KD 4G6TA 4XEIF 1TTWA 2LPUA 2P9ID 2P9SF 4JMFB 3UKRF 1K8KF 1K3SA 2BSHA 2DYTA 1XKPC 2P9IF 2P9KD 2P9KF 3VX8B 3DXKD 3DXKF 2PLGA 1JYAA
chains in the Genus database with same CATH topology
2P9UD 2P9PD 3ULED 4EBRA 2P9ND 3TU3A 3CXJA 3ULEF 2P9UF 1K6ZA 2P9PF 3DWLD 2P9NF 3EPUA 4JD2D 1S28A 3UKUD 3DWLF 3UKUF 4JD2F 4AKXA 2MQDA 4GF3A 2BSIA 1XKPB 1RY9A 4H5BA 3VX7B 4GSLC 1N5BA 1TYQD 1JYOA 2FM8A 1L2WA 1U2VD 1TYQF 3DXMD 4XEID 2P9LD 2BSJA 3KXYA 3RSED 1U2VF 2XGAA 2P9LF 2KC5A 3DXMF 3RSEF 2BHOA 3UKRD 1K3EA 2P9SD 1K8KD 4G6TA 4XEIF 1TTWA 2LPUA 2P9ID 2P9SF 4JMFB 3UKRF 1K8KF 1K3SA 2BSHA 2DYTA 1XKPC 2P9IF 2P9KD 2P9KF 3VX8B 3DXKD 3DXKF 2PLGA 1JYAA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3TU3 A;  3CXJ A;  1K6Z A;  3EPU A;  1S28 A;  4AKX A;  4GF3 A;  2BSI A;  1XKP B;  1RY9 A;  1N5B A;  1JYO A;  2FM8 A;  1L2W A;  3KXY A;  2BSJ A;  2XGA A;  2BHO A;  1K3E A;  4G6T A;  1TTW A;  4JMF B;  1K3S A;  2BSH A;  1XKP C;  2PLG A;  1JYA A; 
#chains in the Genus database with same CATH topology
 2P9U D;  2P9P D;  3ULE D;  4EBR A;  2P9N D;  3TU3 A;  3CXJ A;  3ULE F;  2P9U F;  1K6Z A;  2P9P F;  3DWL D;  2P9N F;  3EPU A;  4JD2 D;  1S28 A;  3UKU D;  3DWL F;  3UKU F;  2OD0 A;  4JD2 F;  4AKX A;  2MQD A;  4GF3 A;  2BSI A;  1XKP B;  1RY9 A;  4H5B A;  3VX7 B;  4GSL C;  1N5B A;  1TYQ D;  1JYO A;  2FM8 A;  1L2W A;  1U2V D;  1TYQ F;  3DXM D;  4XEI D;  2P9L D;  2BSJ A;  3KXY A;  3RSE D;  1U2V F;  2XGA A;  2P9L F;  2KC5 A;  3DXM F;  3RSE F;  2BHO A;  3UKR D;  1K3E A;  2P9S D;  1K8K D;  4G6T A;  4XEI F;  1TTW A;  2LPU A;  2P9I D;  2P9S F;  4JMF B;  3UKR F;  1K8K F;  1K3S A;  2BSH A;  2DYT A;  1XKP C;  2P9I F;  2P9K D;  2P9K F;  3VX8 B;  3DXK D;  3DXK F;  2PLG A;  1JYA A; 
#chains in the Genus database with same CATH homology
 2P9U D;  2P9P D;  3ULE D;  4EBR A;  2P9N D;  3TU3 A;  3CXJ A;  3ULE F;  2P9U F;  1K6Z A;  2P9P F;  3DWL D;  2P9N F;  3EPU A;  4JD2 D;  1S28 A;  3UKU D;  3DWL F;  3UKU F;  4JD2 F;  4AKX A;  2MQD A;  4GF3 A;  2BSI A;  1XKP B;  1RY9 A;  4H5B A;  3VX7 B;  4GSL C;  1N5B A;  1TYQ D;  1JYO A;  2FM8 A;  1L2W A;  1U2V D;  1TYQ F;  3DXM D;  4XEI D;  2P9L D;  2BSJ A;  3KXY A;  3RSE D;  1U2V F;  2XGA A;  2P9L F;  2KC5 A;  3DXM F;  3RSE F;  2BHO A;  3UKR D;  1K3E A;  2P9S D;  1K8K D;  4G6T A;  4XEI F;  1TTW A;  2LPU A;  2P9I D;  2P9S F;  4JMF B;  3UKR F;  1K8K F;  1K3S A;  2BSH A;  2DYT A;  1XKP C;  2P9I F;  2P9K D;  2P9K F;  3VX8 B;  3DXK D;  3DXK F;  2PLG A;  1JYA A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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