2DYT | Genus

Total Genus 64

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	64
sequence length	286
structure length	213
Chain Sequence	TFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKRAEQCIDDIDELIQDMEIKMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVVRQRRRKELQEEQELDGVGDWDSLRVDQYLIVFLKFITSVTPSIQHDYT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The crystal structure of Atg3, an autophagy-related ubiquitin carrier protein (E2) enzyme that mediates Atg8 lipidation pubmed doi rcsb
molecule keywords	Autophagy-related protein 3
molecule tags	Ligase
source organism	Saccharomyces cerevisiae
total genus	64
structure length	213
sequence length	286
ec nomenclature
pdb deposition date	2006-09-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03986	Autophagy_N	Autophagocytosis associated protein (Atg3), N-terminal domain
A	PF03987	Autophagy_act_C	Autophagocytosis associated protein, active-site domain
A	PF10381	Autophagy_C	Autophagocytosis associated protein C-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.50	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	2dytA00

4GSLC 2DYTA 4EBRA 3VX8B 3VX7B 2LPUA
chains in the Genus database with same CATH superfamily

2BHOA 2P9NF 2BSJA 1K8KD 3RSEF 3UKRD 2DYTA 2FM8A 1N5BA 2P9PF 2MQDA 4XEIF 1XKPC 2LPUA 4GF3A 3ULED 1XKPB 4GSLC 3UKUD 3DWLF 4JD2D 2PLGA 2P9KD 1K8KF 3VX8B 3DXMD 3KXYA 3DXKD 2BSHA 4H5BA 1JYAA 3UKRF 1U2VD 2P9LD 2XGAA 1RY9A 2P9UD 3DWLD 1TYQD 2P9SD 3ULEF 3TU3A 4AKXA 2P9ND 2KC5A 1S28A 2P9ID 4G6TA 4EBRA 3UKUF 3EPUA 4JD2F 1K3SA 2P9KF 1TTWA 1K3EA 4JMFB 3DXKF 3DXMF 3RSED 1JYOA 2OD0A 2P9PD 1U2VF 2P9LF 3CXJA 2P9UF 4XEID 1L2WA 1TYQF 2P9SF 2P9IF 3VX7B 1K6ZA 2BSIA
chains in the Genus database with same CATH topology

2BHOA 2P9NF 2BSJA 1K8KD 3RSEF 3UKRD 2DYTA 2FM8A 1N5BA 2P9PF 2MQDA 4XEIF 1XKPC 2LPUA 4GF3A 3ULED 1XKPB 4GSLC 3UKUD 3DWLF 4JD2D 2PLGA 2P9KD 1K8KF 3VX8B 3DXMD 3KXYA 3DXKD 2BSHA 4H5BA 1JYAA 3UKRF 1U2VD 2P9LD 2XGAA 1RY9A 2P9UD 3DWLD 1TYQD 2P9SD 3ULEF 3TU3A 4AKXA 2P9ND 2KC5A 1S28A 2P9ID 4G6TA 4EBRA 3UKUF 3EPUA 4JD2F 1K3SA 2P9KF 1TTWA 1K3EA 4JMFB 3DXKF 3DXMF 3RSED 1JYOA 2P9PD 1U2VF 2P9LF 3CXJA 2P9UF 4XEID 1L2WA 1TYQF 2P9SF 2P9IF 3VX7B 1K6ZA 2BSIA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4GSL C;  2DYT A;  4EBR A;  3VX8 B;  3VX7 B;  2LPU A; 
#chains in the Genus database with same CATH topology
 2BHO A;  2P9N F;  2BSJ A;  1K8K D;  3RSE F;  3UKR D;  2DYT A;  2FM8 A;  1N5B A;  2P9P F;  2MQD A;  4XEI F;  1XKP C;  2LPU A;  4GF3 A;  3ULE D;  1XKP B;  4GSL C;  3UKU D;  3DWL F;  4JD2 D;  2PLG A;  2P9K D;  1K8K F;  3VX8 B;  3DXM D;  3KXY A;  3DXK D;  2BSH A;  4H5B A;  1JYA A;  3UKR F;  1U2V D;  2P9L D;  2XGA A;  1RY9 A;  2P9U D;  3DWL D;  1TYQ D;  2P9S D;  3ULE F;  3TU3 A;  4AKX A;  2P9N D;  2KC5 A;  1S28 A;  2P9I D;  4G6T A;  4EBR A;  3UKU F;  3EPU A;  4JD2 F;  1K3S A;  2P9K F;  1TTW A;  1K3E A;  4JMF B;  3DXK F;  3DXM F;  3RSE D;  1JYO A;  2OD0 A;  2P9P D;  1U2V F;  2P9L F;  3CXJ A;  2P9U F;  4XEI D;  1L2W A;  1TYQ F;  2P9S F;  2P9I F;  3VX7 B;  1K6Z A;  2BSI A; 
#chains in the Genus database with same CATH homology
 2BHO A;  2P9N F;  2BSJ A;  1K8K D;  3RSE F;  3UKR D;  2DYT A;  2FM8 A;  1N5B A;  2P9P F;  2MQD A;  4XEI F;  1XKP C;  2LPU A;  4GF3 A;  3ULE D;  1XKP B;  4GSL C;  3UKU D;  3DWL F;  4JD2 D;  2PLG A;  2P9K D;  1K8K F;  3VX8 B;  3DXM D;  3KXY A;  3DXK D;  2BSH A;  4H5B A;  1JYA A;  3UKR F;  1U2V D;  2P9L D;  2XGA A;  1RY9 A;  2P9U D;  3DWL D;  1TYQ D;  2P9S D;  3ULE F;  3TU3 A;  4AKX A;  2P9N D;  2KC5 A;  1S28 A;  2P9I D;  4G6T A;  4EBR A;  3UKU F;  3EPU A;  4JD2 F;  1K3S A;  2P9K F;  1TTW A;  1K3E A;  4JMF B;  3DXK F;  3DXM F;  3RSE D;  1JYO A;  2P9P D;  1U2V F;  2P9L F;  3CXJ A;  2P9U F;  4XEI D;  1L2W A;  1TYQ F;  2P9S F;  2P9I F;  3VX7 B;  1K6Z A;  2BSI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2DYTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations