2E2HF

Rna polymerase ii elongation complex at 5 mm mg2+ with gtp
Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
83
structure length
83
Chain Sequence
KAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription,transferase/dna-rna hybrid
publication title Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
pubmed doi rcsb
molecule keywords 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'
total genus 13
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2006-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2e2hF00
4G7ZE 1SFOF 1TWFF 3H3VG 4A3CF 3FKIF 3HOYF 5FLMF 3S1MF 3S1RF 1IW7E 3RZDF 3PO3F 1YNNK 4YG2E 3HKZK 5IYBF 5C4XF 5M5WF 1SMYE 4OINE 4A3JF 2NVQF 3HOXF 5FJ8F 1QKLA 4KN4E 4Y52F 1WCMF 1Y1WF 4ZH4E 4BY7F 2E2HF 2WB1I 5IYCF 4G7HE 3I4MF 1I6HF 4A3MF 3S16F 4Y7NF 1HQME 2BE5E 4A3FF 2NVXF 5D4DE 3GTPF 3HOUF 4AYBK 5M5XF 5IP7F 4MEXE 3S1NF 3GTOF 1TWCF 3K7AF 5M3FF 4A3KF 4YFXE 5M3MF 3I4NF 4LK1E 5IYDF 3S2DF 2NVYF 2JA5F 4C3IF 2YU9F 3M4OF 3WODE 2PPBE 4BBSF 2R93F 1TWHF 4XLNE 4KMUE 4A3IF 3DXJE 3PO2F 5D4CE 5E18E 4A3BF 2R92F 4XLPE 5IPLE 4BY1F 4A3LF 3RZOF 3M3YF 1ZYRE 5D4EE 4XSXE 4A3DF 2VUMF 4YFKE 4LK0E 2E2JF 3GTKF 3S2HF 4Q5SE 1Y1VF 3GTJF 4BXXF 3CQZF 4MEYE 5BYHE 3GTQF 5TMCE 4A3EF 5TMFE 1TWAF 5M5YF 2R7ZF 2PMZK 2WAQK 3H0GF 5E17E 4X6AF 2Y0SI 2A6HE 4OIOE 1I3QF 1TWGF 4YFNE 5C3EF 2A68E 3S17F 1I6VE 1R9TF 4JK1E 2NVTF 1YNJK 4OIPE 4XSZE 3S15F 4C3JF 4MQ9E 5C4JF 3HOWF 1K83F 4LLGE 2O5IE 3GTLF 3HOZF 2CW0E 4OIRE 4Q4ZE 4KN7E 4LJZE 4A3GF 3GTMF 4GZYE 2A69E 4BBRF 4C3HF 2JA8F 3HOVF 4C2MF 2JA6F 2O5JE 5IP9F 4G7OE 3EQLE 4A93F 4OIQE 3GTGF 2JA7F 5C44F 2E2IF 3S14F 2A6EE 3S1QF 1I50F 2B63F
chains in the Genus database with same CATH superfamily
4BXXE 2KRXA 4G7ZE 2PMZH 2WAQH 1SFOF 1TWFF 3H3VG 3CQZE 4A3CF 3FKIF 3GTQE 3HOYF 5FLMF 3S1MF 2WB1H 3S1RF 4A3EE 1TWAE 4BBSE 1DZFA 5M5YE 1IW7E 3RZDF 2R7ZE 3PO3F 3H0GE 1YNNK 4X6AE 4YG2E 4QIWK 1TWGE 1I3QE 3HKZK 5IYBF 5C3EE 5C4XF 5M5WF 1SMYE 4OINE 3S17E 1R9TE 4A3JF 2NVQF 4A3LE 3HOXF 5FJ8F 1QKLA 3S15E 4C3JE 5C4JE 4KN4E 4Y52F 3HOWE 1WCMF 1K83E 1Y1WF 4ZH4E 3GTLE 4BY7F 3HOZE 2E2HF 2WB1I 5IYCF 4A3GE 4G7HE 2R93E 3GTME 3I4MF 1I6HF 4A3MF 3S16F 4Y7NF 1HQME 2BE5E 4C3HE 4A3FF 5D4DE 4C2ME 2NVXF 4AYBK 5IP9E 2JA6E 2JA8E 3HOUF 5M5XF 5IP7F 4MEXE 3S1NF 3GTOF 1TWCF 3K7AF 5M3FF 4A93E 3GTGE 2JA7E 5C44E 4A3KF 2E2IE 4YFXE 5M3MF 3I4NF 1EIKA 1I50E 2B63E 4LK1E 5IYDF 3S2DF 2NVYF 1SFOE 1TWFE 2JA5F 4C3IF 2YU9F 3M4OF 3WODE 2PPBE 4BBSF 2R93F 2NVTE 1TWHF 3FKIE 3HKZH 4KMUE 5FLME 3DXJE 4XLNE 4A3IF 3S1RE 3HOYE 5D4CE 3S1ME 3PO2F 5E18E 4A3BF 3RZDE 3PO3E 2R92F 4XLPE 5IPLE 4BY1F 4A3LF 3RZOF 3M3YF 5C4XE 5M5WE 1ZYRE 5D4EE 4XSXE 2Y0SH 4A3DF 4A3JE 2NVQE 4YFKE 2VUMF 4LK0E 3HOXE 4BBRE 2E2JF 3GTKF 3HOVE 5FJ8E 3S2HF 4Q5SE 4Y52E 1WCME 1Y1WE 1Y1VF 4BY7E 3GTJF 2E2HE 4BXXF 4AYBH 5IYCE 3S14E 3S1QE 3CQZF 4MEYE 1I6HE 5BYHE 3GTQF 3S16E 5TMCE 4Y7NE 4A3EF 5TMFE 1TWAF 4A3FE 2NVXE 5M5YF 3GTPE 2R7ZF 4QIWH 4A3CE 2PMZK 2WAQK 3H0GF 5M5XE 5IP7E 4X6AF 5E17E 2Y0SI 1TWCE 2A6HE 3K7AE 4OIOE 3GTOE 1I3QF 1TWGF 4YFNE 5C3EF 4A3KE 2A68E 5M3ME 3I4NE 3S17F 3H3VF 1I6VE 1R9TF 5IYBE 4JK1E 2NVTF 1YNJK 5IYDE 3S2DE 4OIPE 2NVYE 4XSZE 3S15F 4C3JF 4MQ9E 4C3IE 5C4JF 2JA5E 2YU9E 1K83F 4LLGE 3HOWF 3M4OE 1TWHE 2O5IE 3GTLF 4A3IE 3HOZF 2CW0E 4OIRE 3PO2E 4A3BE 4Q4ZE 2R92E 4KN7E 4LJZE 4BY1E 4A3GF 3GTMF 3RZOE 3M3YE 4GZYE 2A69E 4BBRF 4C3HF 2JA8F 3HOVF 4C2MF 2JA6F 3I4ME 5IP9F 4A3DE 2O5JE 2VUME 4A3ME 4G7OE 3GTKE 2E2JE 3S2HE 3EQLE 3HOUE 4A93F 4OIQE 3GTGF 2JA7F 5C44F 2E2IF 3S1NE 3GTPF 1Y1VE 3S14F 2A6EE 5M3FE 3S1QF 3GTJE 1I50F 2B63F
chains in the Genus database with same CATH topology
2KRXA 4G7ZE 1SFOF 1TWFF 3H3VG 4A3CF 3FKIF 3HOYF 5FLMF 3S1MF 3S1RF 1IW7E 3RZDF 3PO3F 1YNNK 4YG2E 4QIWK 3HKZK 5IYBF 5C4XF 5M5WF 1SMYE 4OINE 4A3JF 2NVQF 3HOXF 5FJ8F 1QKLA 4KN4E 4Y52F 1WCMF 1Y1WF 4ZH4E 4BY7F 2E2HF 2WB1I 5IYCF 4G7HE 3I4MF 1I6HF 4A3MF 3S16F 4Y7NF 1HQME 2BE5E 4A3FF 2NVXF 5D4DE 3GTPF 3HOUF 4AYBK 5M5XF 5IP7F 4MEXE 3S1NF 3GTOF 1TWCF 3K7AF 5M3FF 4A3KF 4YFXE 5M3MF 3I4NF 4LK1E 5IYDF 3S2DF 2NVYF 2JA5F 4C3IF 2YU9F 3M4OF 3WODE 2PPBE 4BBSF 2R93F 1TWHF 4XLNE 4KMUE 4A3IF 3DXJE 3PO2F 5D4CE 5E18E 4A3BF 2R92F 4XLPE 5IPLE 4BY1F 4A3LF 3RZOF 3M3YF 1ZYRE 5D4EE 4XSXE 4A3DF 2VUMF 4YFKE 4LK0E 2E2JF 3GTKF 3S2HF 4Q5SE 1Y1VF 3GTJF 4BXXF 3CQZF 4MEYE 5BYHE 3GTQF 5TMCE 4A3EF 5TMFE 1TWAF 5M5YF 2R7ZF 2PMZK 2WAQK 3H0GF 5E17E 4X6AF 2Y0SI 2A6HE 4OIOE 1I3QF 1TWGF 4YFNE 5C3EF 2A68E 3S17F 1I6VE 1R9TF 4JK1E 2NVTF 1YNJK 4OIPE 4XSZE 3S15F 4C3JF 4MQ9E 5C4JF 3HOWF 1K83F 4LLGE 2O5IE 3GTLF 3HOZF 2CW0E 4OIRE 4Q4ZE 4KN7E 4LJZE 4A3GF 3GTMF 4GZYE 2A69E 4BBRF 4C3HF 2JA8F 3HOVF 4C2MF 2JA6F 2O5JE 5IP9F 4G7OE 3EQLE 4A93F 4OIQE 3GTGF 2JA7F 5C44F 2E2IF 3S14F 2A6EE 3S1QF 1I50F 2B63F
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G7Z E;  1SFO F;  1TWF F;  3H3V G;  4A3C F;  3FKI F;  3HOY F;  5FLM F;  3S1M F;  3S1R F;  1IW7 E;  3RZD F;  3PO3 F;  1YNN K;  4YG2 E;  3HKZ K;  5IYB F;  5C4X F;  5M5W F;  1SMY E;  4OIN E;  4A3J F;  2NVQ F;  3HOX F;  5FJ8 F;  1QKL A;  4KN4 E;  4Y52 F;  1WCM F;  1Y1W F;  4ZH4 E;  4BY7 F;  2E2H F;  2WB1 I;  5IYC F;  4G7H E;  3I4M F;  1I6H F;  4A3M F;  3S16 F;  4Y7N F;  1HQM E;  2BE5 E;  4A3F F;  2NVX F;  5D4D E;  3GTP F;  3HOU F;  4AYB K;  5M5X F;  5IP7 F;  4MEX E;  3S1N F;  3GTO F;  1TWC F;  3K7A F;  5M3F F;  4A3K F;  4YFX E;  5M3M F;  3I4N F;  4LK1 E;  5IYD F;  3S2D F;  2NVY F;  2JA5 F;  4C3I F;  2YU9 F;  3M4O F;  3WOD E;  2PPB E;  4BBS F;  2R93 F;  1TWH F;  4XLN E;  4KMU E;  4A3I F;  3DXJ E;  3PO2 F;  5D4C E;  5E18 E;  4A3B F;  2R92 F;  4XLP E;  5IPL E;  4BY1 F;  4A3L F;  3RZO F;  3M3Y F;  1ZYR E;  5D4E E;  4XSX E;  4A3D F;  2VUM F;  4YFK E;  4LK0 E;  2E2J F;  3GTK F;  3S2H F;  4Q5S E;  1Y1V F;  3GTJ F;  4BXX F;  3CQZ F;  4MEY E;  5BYH E;  3GTQ F;  5TMC E;  4A3E F;  5TMF E;  1TWA F;  5M5Y F;  2R7Z F;  2PMZ K;  2WAQ K;  3H0G F;  5E17 E;  4X6A F;  2Y0S I;  2A6H E;  4OIO E;  1I3Q F;  1TWG F;  4YFN E;  5C3E F;  2A68 E;  3S17 F;  1I6V E;  1R9T F;  4JK1 E;  2NVT F;  1YNJ K;  4OIP E;  4XSZ E;  3S15 F;  4C3J F;  4MQ9 E;  5C4J F;  3HOW F;  1K83 F;  4LLG E;  2O5I E;  3GTL F;  3HOZ F;  2CW0 E;  4OIR E;  4Q4Z E;  4KN7 E;  4LJZ E;  4A3G F;  3GTM F;  4GZY E;  2A69 E;  4BBR F;  4C3H F;  2JA8 F;  3HOV F;  4C2M F;  2JA6 F;  2O5J E;  5IP9 F;  4G7O E;  3EQL E;  4A93 F;  4OIQ E;  3GTG F;  2JA7 F;  5C44 F;  2E2I F;  3S14 F;  2A6E E;  3S1Q F;  1I50 F;  2B63 F; 
#chains in the Genus database with same CATH topology
 4BXX E;  2KRX A;  4G7Z E;  2PMZ H;  2WAQ H;  1SFO F;  1TWF F;  3H3V G;  3CQZ E;  4A3C F;  3FKI F;  3GTQ E;  3HOY F;  5FLM F;  3S1M F;  2WB1 H;  3S1R F;  4A3E E;  1TWA E;  4BBS E;  1DZF A;  5M5Y E;  1IW7 E;  3RZD F;  2R7Z E;  3PO3 F;  3H0G E;  1YNN K;  4X6A E;  4YG2 E;  4QIW K;  1TWG E;  1I3Q E;  3HKZ K;  5IYB F;  5C3E E;  5C4X F;  5M5W F;  1SMY E;  4OIN E;  3S17 E;  1R9T E;  4A3J F;  2NVQ F;  4A3L E;  3HOX F;  5FJ8 F;  1QKL A;  3S15 E;  4C3J E;  5C4J E;  4KN4 E;  4Y52 F;  3HOW E;  1WCM F;  1K83 E;  1Y1W F;  4ZH4 E;  3GTL E;  4BY7 F;  3HOZ E;  2E2H F;  2WB1 I;  5IYC F;  4A3G E;  4G7H E;  2R93 E;  3GTM E;  3I4M F;  1I6H F;  4A3M F;  3S16 F;  4Y7N F;  1HQM E;  2BE5 E;  4C3H E;  4A3F F;  5D4D E;  4C2M E;  2NVX F;  4AYB K;  5IP9 E;  2JA6 E;  2JA8 E;  3HOU F;  5M5X F;  5IP7 F;  4MEX E;  3S1N F;  3GTO F;  1TWC F;  3K7A F;  5M3F F;  4A93 E;  3GTG E;  2JA7 E;  5C44 E;  4A3K F;  2E2I E;  4YFX E;  5M3M F;  3I4N F;  1EIK A;  1I50 E;  2B63 E;  4LK1 E;  5IYD F;  3S2D F;  2NVY F;  1SFO E;  1TWF E;  2JA5 F;  4C3I F;  2YU9 F;  3M4O F;  3WOD E;  2PPB E;  4BBS F;  2R93 F;  2NVT E;  1TWH F;  3FKI E;  3HKZ H;  4KMU E;  5FLM E;  3DXJ E;  4XLN E;  4A3I F;  3S1R E;  3HOY E;  5D4C E;  3S1M E;  3PO2 F;  5E18 E;  4A3B F;  3RZD E;  3PO3 E;  2R92 F;  4XLP E;  5IPL E;  4BY1 F;  4A3L F;  3RZO F;  3M3Y F;  5C4X E;  5M5W E;  1ZYR E;  5D4E E;  4XSX E;  2Y0S H;  4A3D F;  4A3J E;  2NVQ E;  4YFK E;  2VUM F;  4LK0 E;  3HOX E;  4BBR E;  2E2J F;  3GTK F;  3HOV E;  5FJ8 E;  3S2H F;  4Q5S E;  4Y52 E;  1WCM E;  1Y1W E;  1Y1V F;  4BY7 E;  3GTJ F;  2E2H E;  4BXX F;  4AYB H;  5IYC E;  3S14 E;  3S1Q E;  3CQZ F;  4MEY E;  1I6H E;  5BYH E;  3GTQ F;  3S16 E;  5TMC E;  4Y7N E;  4A3E F;  5TMF E;  1TWA F;  4A3F E;  2NVX E;  5M5Y F;  3GTP E;  2R7Z F;  4QIW H;  4A3C E;  2PMZ K;  2WAQ K;  3H0G F;  5M5X E;  5IP7 E;  4X6A F;  5E17 E;  2Y0S I;  1TWC E;  2A6H E;  3K7A E;  4OIO E;  3GTO E;  1I3Q F;  1TWG F;  4YFN E;  5C3E F;  4A3K E;  2A68 E;  5M3M E;  3I4N E;  3S17 F;  3H3V F;  1I6V E;  1R9T F;  5IYB E;  4JK1 E;  2NVT F;  1YNJ K;  5IYD E;  3S2D E;  4OIP E;  2NVY E;  4XSZ E;  3S15 F;  4C3J F;  4MQ9 E;  4C3I E;  5C4J F;  2JA5 E;  2YU9 E;  1K83 F;  4LLG E;  3HOW F;  3M4O E;  1TWH E;  2O5I E;  3GTL F;  4A3I E;  3HOZ F;  2CW0 E;  4OIR E;  3PO2 E;  4A3B E;  4Q4Z E;  2R92 E;  4KN7 E;  4LJZ E;  4BY1 E;  4A3G F;  3GTM F;  3RZO E;  3M3Y E;  4GZY E;  2A69 E;  4BBR F;  4C3H F;  2JA8 F;  3HOV F;  4C2M F;  2JA6 F;  3I4M E;  5IP9 F;  4A3D E;  2O5J E;  2VUM E;  4A3M E;  4G7O E;  3GTK E;  2E2J E;  3S2H E;  3EQL E;  3HOU E;  4A93 F;  4OIQ E;  3GTG F;  2JA7 F;  5C44 F;  2E2I F;  3S1N E;  3GTP F;  1Y1V E;  3S14 F;  2A6E E;  5M3F E;  3S1Q F;  3GTJ E;  1I50 F;  2B63 F; 
#chains in the Genus database with same CATH homology
 2KRX A;  4G7Z E;  1SFO F;  1TWF F;  3H3V G;  4A3C F;  3FKI F;  3HOY F;  5FLM F;  3S1M F;  3S1R F;  1IW7 E;  3RZD F;  3PO3 F;  1YNN K;  4YG2 E;  4QIW K;  3HKZ K;  5IYB F;  5C4X F;  5M5W F;  1SMY E;  4OIN E;  4A3J F;  2NVQ F;  3HOX F;  5FJ8 F;  1QKL A;  4KN4 E;  4Y52 F;  1WCM F;  1Y1W F;  4ZH4 E;  4BY7 F;  2E2H F;  2WB1 I;  5IYC F;  4G7H E;  3I4M F;  1I6H F;  4A3M F;  3S16 F;  4Y7N F;  1HQM E;  2BE5 E;  4A3F F;  2NVX F;  5D4D E;  3GTP F;  3HOU F;  4AYB K;  5M5X F;  5IP7 F;  4MEX E;  3S1N F;  3GTO F;  1TWC F;  3K7A F;  5M3F F;  4A3K F;  4YFX E;  5M3M F;  3I4N F;  4LK1 E;  5IYD F;  3S2D F;  2NVY F;  2JA5 F;  4C3I F;  2YU9 F;  3M4O F;  3WOD E;  2PPB E;  4BBS F;  2R93 F;  1TWH F;  4XLN E;  4KMU E;  4A3I F;  3DXJ E;  3PO2 F;  5D4C E;  5E18 E;  4A3B F;  2R92 F;  4XLP E;  5IPL E;  4BY1 F;  4A3L F;  3RZO F;  3M3Y F;  1ZYR E;  5D4E E;  4XSX E;  4A3D F;  2VUM F;  4YFK E;  4LK0 E;  2E2J F;  3GTK F;  3S2H F;  4Q5S E;  1Y1V F;  3GTJ F;  4BXX F;  3CQZ F;  4MEY E;  5BYH E;  3GTQ F;  5TMC E;  4A3E F;  5TMF E;  1TWA F;  5M5Y F;  2R7Z F;  2PMZ K;  2WAQ K;  3H0G F;  5E17 E;  4X6A F;  2Y0S I;  2A6H E;  4OIO E;  1I3Q F;  1TWG F;  4YFN E;  5C3E F;  2A68 E;  3S17 F;  1I6V E;  1R9T F;  4JK1 E;  2NVT F;  1YNJ K;  4OIP E;  4XSZ E;  3S15 F;  4C3J F;  4MQ9 E;  5C4J F;  3HOW F;  1K83 F;  4LLG E;  2O5I E;  3GTL F;  3HOZ F;  2CW0 E;  4OIR E;  4Q4Z E;  4KN7 E;  4LJZ E;  4A3G F;  3GTM F;  4GZY E;  2A69 E;  4BBR F;  4C3H F;  2JA8 F;  3HOV F;  4C2M F;  2JA6 F;  2O5J E;  5IP9 F;  4G7O E;  3EQL E;  4A93 F;  4OIQ E;  3GTG F;  2JA7 F;  5C44 F;  2E2I F;  3S14 F;  2A6E E;  3S1Q F;  1I50 F;  2B63 F; 
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