2E2HF

Rna polymerase ii elongation complex at 5 mm mg2+ with gtp
Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
83
structure length
83
Chain Sequence
KAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription,transferase/dna-rna hybrid
publication title Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
pubmed doi rcsb
molecule keywords 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'
total genus 13
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2006-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2e2hF00
2E2HF 1K83F 4A93F 3H0GF 5TMCE 1SMYE 1YNNK 4Y52F 1YNJK 4AYBK 1TWGF 1I3QF 3FKIF 5M3MF 3S15F 3CQZF 4A3BF 1IW7E 3HKZK 1ZYRE 2PPBE 1QKLA 4C3JF 1SFOF 3S1NF 4G7ZE 4OIPE 2A69E 5C3EF 3GTKF 4C2MF 1TWHF 4XSZE 2CW0E 4OIQE 2R92F 2A68E 4A3CF 3GTQF 4KN4E 2E2JF 1TWCF 3HOVF 3GTMF 5TMFE 3RZDF 4A3IF 3S1RF 3S14F 5E17E 3S16F 3S1MF 4KN7E 4XSXE 5FJ8F 4BY1F 1I6HF 4LK0E 1I50F 4A3DF 1HQME 4MEXE 2O5IE 5IYDF 4A3MF 4A3JF 4OIRE 3M4OF 4G7HE 4BY7F 2O5JE 2PMZK 2A6HE 1Y1VF 4KMUE 4YFXE 5IYBF 5FLMF 5D4CE 4YFKE 5IPLE 4LK1E 4A3KF 4GZYE 4JK1E 3HOZF 4LLGE 3PO3F 2JA7F 5M3FF 4Q4ZE 2R93F 5D4DE 3GTPF 3I4NF 4Q5SE 2JA6F 2B63F 1Y1WF 3RZOF 5M5WF 2BE5E 5C4XF 4C3IF 3GTJF 3GTOF 4XLNE 3WODE 1TWAF 3DXJE 4XLPE 2E2IF 3PO2F 3H3VG 4A3GF 3K7AF 3S1QF 1TWFF 4YFNE 4OINE 4A3EF 4A3LF 3GTLF 5M5XF 2R7ZF 2JA8F 4MQ9E 5IP7F 5D4EE 3HOWF 3HOYF 3HOUF 2A6EE 3I4MF 2JA5F 4LJZE 3M3YF 4ZH4E 2YU9F 2NVXF 4C3HF 2WB1I 4OIOE 2NVTF 4MEYE 3S2DF 4A3FF 2VUMF 5E18E 3GTGF 2WAQK 3EQLE 3HOXF 5C4JF 5IYCF 5M5YF 2NVQF 3S2HF 4Y7NF 5C44F 4BBRF 4G7OE 5IP9F 1I6VE 4BBSF 2Y0SI 1WCMF 3S17F 5BYHE 4X6AF 4YG2E 2NVYF 4BXXF 1R9TF
chains in the Genus database with same CATH superfamily
3K7AE 2E2HF 3S1QE 1K83F 4A93F 1TWFE 3H0GF 5TMCE 4A3EE 4A3LE 2PMZH 1SMYE 3GTLE 1YNNK 5M5XE 4Y52F 1YNJK 4QIWH 2R7ZE 2JA8E 4AYBK 5IP7E 1TWGF 1I3QF 3FKIF 5M3MF 3HOYE 3HOUE 3HOWE 3S15F 3CQZF 4A3BF 3I4ME 2JA5E 1IW7E 3M3YE 2YU9E 3HKZK 1ZYRE 2PPBE 2NVXE 1QKLA 3I4NE 4C3HE 4C3JF 1SFOF 3S1NF 4G7ZE 4OIPE 2A69E 5C3EF 2NVTE 1DZFA 3S2DE 3GTKF 4C2MF 1TWHF 4XSZE 4A3FE 2CW0E 2VUME 2KRXA 3GTGE 4OIQE 3HOXE 2R92F 2A68E 4A3CF 5C4JE 3GTQF 5IYCE 4KN4E 2E2JF 1TWCF 5M5YE 2NVQE 3GTMF 5TMFE 4Y7NE 4BBRE 5C44E 3HOVF 3RZDF 3S2HE 4A3GE 4A3IF 5IP9E 3S1RF 3S14F 4BBSE 5E17E 3S16F 3S1MF 4KN7E 4XSXE 1WCME 5FJ8F 4BY1F 3S17E 2WB1H 1I6HF 4LK0E 1I50F 4X6AE 4A3DF 1HQME 2NVYE 4MEXE 4BXXE 1R9TE 2O5IE 5IYDF 4A3MF 2E2HE 4A3JF 4OIRE 3M4OF 4G7HE 1K83E 4BY7F 2PMZK 2A6HE 4A93E 2O5JE 1Y1VF 4KMUE 4YFXE 3H0GE 5IYBF 5FLMF 5D4CE 4QIWK 4YFKE 5IPLE 4Y52E 4LK1E 2Y0SH 1TWGE 3FKIE 5M3ME 4A3KF 3S15E 4JK1E 4GZYE 3HOZF 3CQZE 4LLGE 3PO3F 4A3BE 2JA7F 5M3FF 4Q4ZE 2R93F 4C3JE 5D4DE 1SFOE 3GTPF 3I4NF 4Q5SE 2WAQH 2JA6F 3S1NE 2B63F 1Y1WF 3RZOF 5M5WF 2BE5E 5C4XF 3GTKE 4C3IF 4C2ME 3GTJF 1TWHE 3GTOF 4XLNE 3WODE 1TWAF 4A3CE 2R92E 3GTQE 3H3VF 2E2JE 1TWCE 3DXJE 3GTME 3HOVE 4XLPE 2E2IF 3PO2F 3H3VG 3RZDE 4A3GF 4A3IE 3K7AF 3S1RE 3S14E 3S16E 3S1QF 1TWFF 3S1ME 4YFNE 5FJ8E 4A3EF 4OINE 4BY1E 4A3LF 1I6HE 1I50E 3GTLF 5M5XF 4A3DE 2R7ZF 1I3QE 2JA8F 5IYDE 4MQ9E 5IP7F 4A3ME 5D4EE 4A3JE 3HOWF 3M4OE 3HOUF 2A6EE 3HOYF 4BY7E 3I4MF 1Y1VE 4AYBH 5FLME 4LJZE 5IYBE 2JA5F 4ZH4E 2YU9F 3M3YF 2NVXF 4C3HF 3HKZH 2WB1I 5C3EE 4OIOE 1EIKA 4A3KE 2NVTF 4MEYE 3S2DF 3PO3E 3HOZE 2JA7E 4A3FF 2VUMF 5M3FE 5E18E 3GTGF 2WAQK 3EQLE 3HOXF 2R93E 5C4JF 5IYCF 3GTPE 5M5YF 2JA6E 2NVQF 4Y7NF 5C44F 4BBRF 3S2HF 4G7OE 2B63E 1Y1WE 3RZOE 5M5WE 5C4XE 5IP9F 4C3IE 3GTJE 1I6VE 3GTOE 2Y0SI 4BBSF 1TWAE 1WCMF 3S17F 5BYHE 2E2IE 4YG2E 3PO2E 4X6AF 2NVYF 4BXXF 1R9TF
chains in the Genus database with same CATH topology
2E2HF 1K83F 4A93F 3H0GF 5TMCE 1SMYE 1YNNK 4Y52F 1YNJK 4AYBK 1TWGF 1I3QF 3FKIF 5M3MF 3S15F 3CQZF 4A3BF 1IW7E 3HKZK 1ZYRE 2PPBE 1QKLA 4C3JF 1SFOF 3S1NF 4G7ZE 4OIPE 2A69E 5C3EF 3GTKF 4C2MF 1TWHF 4XSZE 2CW0E 2KRXA 4OIQE 2R92F 2A68E 4A3CF 3GTQF 4KN4E 2E2JF 1TWCF 3HOVF 3GTMF 5TMFE 3RZDF 4A3IF 3S1RF 3S14F 5E17E 3S16F 3S1MF 4KN7E 4XSXE 5FJ8F 4BY1F 1I6HF 4LK0E 1I50F 4A3DF 1HQME 4MEXE 2O5IE 5IYDF 4A3MF 4A3JF 4OIRE 3M4OF 4G7HE 4BY7F 2O5JE 2PMZK 2A6HE 1Y1VF 4KMUE 4YFXE 5IYBF 5FLMF 5D4CE 4QIWK 4YFKE 5IPLE 4LK1E 4A3KF 4GZYE 4JK1E 3HOZF 4LLGE 3PO3F 2JA7F 5M3FF 4Q4ZE 2R93F 5D4DE 3GTPF 3I4NF 4Q5SE 2JA6F 2B63F 1Y1WF 3RZOF 5M5WF 2BE5E 5C4XF 4C3IF 3GTJF 3GTOF 4XLNE 3WODE 1TWAF 3DXJE 4XLPE 2E2IF 3PO2F 3H3VG 4A3GF 3K7AF 3S1QF 1TWFF 4YFNE 4OINE 4A3EF 4A3LF 3GTLF 5M5XF 2R7ZF 2JA8F 4MQ9E 5IP7F 5D4EE 3HOWF 3HOYF 3HOUF 2A6EE 3I4MF 2JA5F 4LJZE 3M3YF 4ZH4E 2YU9F 2NVXF 4C3HF 2WB1I 4OIOE 2NVTF 4MEYE 3S2DF 4A3FF 2VUMF 5E18E 3GTGF 2WAQK 3EQLE 3HOXF 5C4JF 5IYCF 5M5YF 2NVQF 3S2HF 4Y7NF 5C44F 4BBRF 4G7OE 5IP9F 1I6VE 4BBSF 2Y0SI 1WCMF 3S17F 5BYHE 4X6AF 4YG2E 2NVYF 4BXXF 1R9TF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E2H F;  1K83 F;  4A93 F;  3H0G F;  5TMC E;  1SMY E;  1YNN K;  4Y52 F;  1YNJ K;  4AYB K;  1TWG F;  1I3Q F;  3FKI F;  5M3M F;  3S15 F;  3CQZ F;  4A3B F;  1IW7 E;  3HKZ K;  1ZYR E;  2PPB E;  1QKL A;  4C3J F;  1SFO F;  3S1N F;  4G7Z E;  4OIP E;  2A69 E;  5C3E F;  3GTK F;  4C2M F;  1TWH F;  4XSZ E;  2CW0 E;  4OIQ E;  2R92 F;  2A68 E;  4A3C F;  3GTQ F;  4KN4 E;  2E2J F;  1TWC F;  3HOV F;  3GTM F;  5TMF E;  3RZD F;  4A3I F;  3S1R F;  3S14 F;  5E17 E;  3S16 F;  3S1M F;  4KN7 E;  4XSX E;  5FJ8 F;  4BY1 F;  1I6H F;  4LK0 E;  1I50 F;  4A3D F;  1HQM E;  4MEX E;  2O5I E;  5IYD F;  4A3M F;  4A3J F;  4OIR E;  3M4O F;  4G7H E;  4BY7 F;  2O5J E;  2PMZ K;  2A6H E;  1Y1V F;  4KMU E;  4YFX E;  5IYB F;  5FLM F;  5D4C E;  4YFK E;  5IPL E;  4LK1 E;  4A3K F;  4GZY E;  4JK1 E;  3HOZ F;  4LLG E;  3PO3 F;  2JA7 F;  5M3F F;  4Q4Z E;  2R93 F;  5D4D E;  3GTP F;  3I4N F;  4Q5S E;  2JA6 F;  2B63 F;  1Y1W F;  3RZO F;  5M5W F;  2BE5 E;  5C4X F;  4C3I F;  3GTJ F;  3GTO F;  4XLN E;  3WOD E;  1TWA F;  3DXJ E;  4XLP E;  2E2I F;  3PO2 F;  3H3V G;  4A3G F;  3K7A F;  3S1Q F;  1TWF F;  4YFN E;  4OIN E;  4A3E F;  4A3L F;  3GTL F;  5M5X F;  2R7Z F;  2JA8 F;  4MQ9 E;  5IP7 F;  5D4E E;  3HOW F;  3HOY F;  3HOU F;  2A6E E;  3I4M F;  2JA5 F;  4LJZ E;  3M3Y F;  4ZH4 E;  2YU9 F;  2NVX F;  4C3H F;  2WB1 I;  4OIO E;  2NVT F;  4MEY E;  3S2D F;  4A3F F;  2VUM F;  5E18 E;  3GTG F;  2WAQ K;  3EQL E;  3HOX F;  5C4J F;  5IYC F;  5M5Y F;  2NVQ F;  3S2H F;  4Y7N F;  5C44 F;  4BBR F;  4G7O E;  5IP9 F;  1I6V E;  4BBS F;  2Y0S I;  1WCM F;  3S17 F;  5BYH E;  4X6A F;  4YG2 E;  2NVY F;  4BXX F;  1R9T F; 
#chains in the Genus database with same CATH topology
 3K7A E;  2E2H F;  3S1Q E;  1K83 F;  4A93 F;  1TWF E;  3H0G F;  5TMC E;  4A3E E;  4A3L E;  2PMZ H;  1SMY E;  3GTL E;  1YNN K;  5M5X E;  4Y52 F;  1YNJ K;  4QIW H;  2R7Z E;  2JA8 E;  4AYB K;  5IP7 E;  1TWG F;  1I3Q F;  3FKI F;  5M3M F;  3HOY E;  3HOU E;  3HOW E;  3S15 F;  3CQZ F;  4A3B F;  3I4M E;  2JA5 E;  1IW7 E;  3M3Y E;  2YU9 E;  3HKZ K;  1ZYR E;  2PPB E;  2NVX E;  1QKL A;  3I4N E;  4C3H E;  4C3J F;  1SFO F;  3S1N F;  4G7Z E;  4OIP E;  2A69 E;  5C3E F;  2NVT E;  1DZF A;  3S2D E;  3GTK F;  4C2M F;  1TWH F;  4XSZ E;  4A3F E;  2CW0 E;  2VUM E;  2KRX A;  3GTG E;  4OIQ E;  3HOX E;  2R92 F;  2A68 E;  4A3C F;  5C4J E;  3GTQ F;  5IYC E;  4KN4 E;  2E2J F;  1TWC F;  5M5Y E;  2NVQ E;  3GTM F;  5TMF E;  4Y7N E;  4BBR E;  5C44 E;  3HOV F;  3RZD F;  3S2H E;  4A3G E;  4A3I F;  5IP9 E;  3S1R F;  3S14 F;  4BBS E;  5E17 E;  3S16 F;  3S1M F;  4KN7 E;  4XSX E;  1WCM E;  5FJ8 F;  4BY1 F;  3S17 E;  2WB1 H;  1I6H F;  4LK0 E;  1I50 F;  4X6A E;  4A3D F;  1HQM E;  2NVY E;  4MEX E;  4BXX E;  1R9T E;  2O5I E;  5IYD F;  4A3M F;  2E2H E;  4A3J F;  4OIR E;  3M4O F;  4G7H E;  1K83 E;  4BY7 F;  2PMZ K;  2A6H E;  4A93 E;  2O5J E;  1Y1V F;  4KMU E;  4YFX E;  3H0G E;  5IYB F;  5FLM F;  5D4C E;  4QIW K;  4YFK E;  5IPL E;  4Y52 E;  4LK1 E;  2Y0S H;  1TWG E;  3FKI E;  5M3M E;  4A3K F;  3S15 E;  4JK1 E;  4GZY E;  3HOZ F;  3CQZ E;  4LLG E;  3PO3 F;  4A3B E;  2JA7 F;  5M3F F;  4Q4Z E;  2R93 F;  4C3J E;  5D4D E;  1SFO E;  3GTP F;  3I4N F;  4Q5S E;  2WAQ H;  2JA6 F;  3S1N E;  2B63 F;  1Y1W F;  3RZO F;  5M5W F;  2BE5 E;  5C4X F;  3GTK E;  4C3I F;  4C2M E;  3GTJ F;  1TWH E;  3GTO F;  4XLN E;  3WOD E;  1TWA F;  4A3C E;  2R92 E;  3GTQ E;  3H3V F;  2E2J E;  1TWC E;  3DXJ E;  3GTM E;  3HOV E;  4XLP E;  2E2I F;  3PO2 F;  3H3V G;  3RZD E;  4A3G F;  4A3I E;  3K7A F;  3S1R E;  3S14 E;  3S16 E;  3S1Q F;  1TWF F;  3S1M E;  4YFN E;  5FJ8 E;  4A3E F;  4OIN E;  4BY1 E;  4A3L F;  1I6H E;  1I50 E;  3GTL F;  5M5X F;  4A3D E;  2R7Z F;  1I3Q E;  2JA8 F;  5IYD E;  4MQ9 E;  5IP7 F;  4A3M E;  5D4E E;  4A3J E;  3HOW F;  3M4O E;  3HOU F;  2A6E E;  3HOY F;  4BY7 E;  3I4M F;  1Y1V E;  4AYB H;  5FLM E;  4LJZ E;  5IYB E;  2JA5 F;  4ZH4 E;  2YU9 F;  3M3Y F;  2NVX F;  4C3H F;  3HKZ H;  2WB1 I;  5C3E E;  4OIO E;  1EIK A;  4A3K E;  2NVT F;  4MEY E;  3S2D F;  3PO3 E;  3HOZ E;  2JA7 E;  4A3F F;  2VUM F;  5M3F E;  5E18 E;  3GTG F;  2WAQ K;  3EQL E;  3HOX F;  2R93 E;  5C4J F;  5IYC F;  3GTP E;  5M5Y F;  2JA6 E;  2NVQ F;  4Y7N F;  5C44 F;  4BBR F;  3S2H F;  4G7O E;  2B63 E;  1Y1W E;  3RZO E;  5M5W E;  5C4X E;  5IP9 F;  4C3I E;  3GTJ E;  1I6V E;  3GTO E;  2Y0S I;  4BBS F;  1TWA E;  1WCM F;  3S17 F;  5BYH E;  2E2I E;  4YG2 E;  3PO2 E;  4X6A F;  2NVY F;  4BXX F;  1R9T F; 
#chains in the Genus database with same CATH homology
 2E2H F;  1K83 F;  4A93 F;  3H0G F;  5TMC E;  1SMY E;  1YNN K;  4Y52 F;  1YNJ K;  4AYB K;  1TWG F;  1I3Q F;  3FKI F;  5M3M F;  3S15 F;  3CQZ F;  4A3B F;  1IW7 E;  3HKZ K;  1ZYR E;  2PPB E;  1QKL A;  4C3J F;  1SFO F;  3S1N F;  4G7Z E;  4OIP E;  2A69 E;  5C3E F;  3GTK F;  4C2M F;  1TWH F;  4XSZ E;  2CW0 E;  2KRX A;  4OIQ E;  2R92 F;  2A68 E;  4A3C F;  3GTQ F;  4KN4 E;  2E2J F;  1TWC F;  3HOV F;  3GTM F;  5TMF E;  3RZD F;  4A3I F;  3S1R F;  3S14 F;  5E17 E;  3S16 F;  3S1M F;  4KN7 E;  4XSX E;  5FJ8 F;  4BY1 F;  1I6H F;  4LK0 E;  1I50 F;  4A3D F;  1HQM E;  4MEX E;  2O5I E;  5IYD F;  4A3M F;  4A3J F;  4OIR E;  3M4O F;  4G7H E;  4BY7 F;  2O5J E;  2PMZ K;  2A6H E;  1Y1V F;  4KMU E;  4YFX E;  5IYB F;  5FLM F;  5D4C E;  4QIW K;  4YFK E;  5IPL E;  4LK1 E;  4A3K F;  4GZY E;  4JK1 E;  3HOZ F;  4LLG E;  3PO3 F;  2JA7 F;  5M3F F;  4Q4Z E;  2R93 F;  5D4D E;  3GTP F;  3I4N F;  4Q5S E;  2JA6 F;  2B63 F;  1Y1W F;  3RZO F;  5M5W F;  2BE5 E;  5C4X F;  4C3I F;  3GTJ F;  3GTO F;  4XLN E;  3WOD E;  1TWA F;  3DXJ E;  4XLP E;  2E2I F;  3PO2 F;  3H3V G;  4A3G F;  3K7A F;  3S1Q F;  1TWF F;  4YFN E;  4OIN E;  4A3E F;  4A3L F;  3GTL F;  5M5X F;  2R7Z F;  2JA8 F;  4MQ9 E;  5IP7 F;  5D4E E;  3HOW F;  3HOY F;  3HOU F;  2A6E E;  3I4M F;  2JA5 F;  4LJZ E;  3M3Y F;  4ZH4 E;  2YU9 F;  2NVX F;  4C3H F;  2WB1 I;  4OIO E;  2NVT F;  4MEY E;  3S2D F;  4A3F F;  2VUM F;  5E18 E;  3GTG F;  2WAQ K;  3EQL E;  3HOX F;  5C4J F;  5IYC F;  5M5Y F;  2NVQ F;  3S2H F;  4Y7N F;  5C44 F;  4BBR F;  4G7O E;  5IP9 F;  1I6V E;  4BBS F;  2Y0S I;  1WCM F;  3S17 F;  5BYH E;  4X6A F;  4YG2 E;  2NVY F;  4BXX F;  1R9T F; 
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similar chains in the Genus database (?% sequence similarity)
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