2E2JF

Rna polymerase ii elongation complex in 5 mm mg+2 with gmpcpp
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
86
structure length
86
Chain Sequence
LKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV2 (75-78)EMPTYTIV1 (69-72)Updating...
connected with : NaN
molecule tags Transcription,transferase/dna-rna hybrid
publication title Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
pubmed doi rcsb
molecule keywords 5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3'
total genus 16
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2006-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2e2jF00
3WODE 4BY1F 5D4EE 4XLPE 2A6EE 4OINE 5TMCE 3S2DF 3S1NF 5M5YF 3S17F 1K83F 5C44F 2PPBE 2E2HF 3RZDF 3S1MF 2E2IF 3GTLF 2R7ZF 1WCMF 4BBSF 5M5XF 4LJZE 3K7AF 2WAQK 4AYBK 5D4DE 4JK1E 3GTGF 4XLNE 4OIQE 1I50F 4Y7NF 2A69E 4A3IF 5E18E 4BY7F 4A3KF 1QKLA 5C4XF 1IW7E 2JA5F 3DXJE 5M3MF 4LK1E 3S16F 4OIPE 4LLGE 3S14F 1TWAF 2O5JE 3CQZF 5M3FF 3HOUF 5D4CE 2NVYF 5IYDF 4C3HF 3GTQF 3M4OF 3M3YF 4KN4E 4A3FF 3S2HF 4YG2E 4MQ9E 5IPLE 2JA6F 4G7HE 2R92F 4A3BF 4GZYE 1I6HF 2VUMF 1YNJK 3I4MF 2Y0SI 5IYCF 5FJ8F 3S1QF 4A3MF 5IP9F 1TWGF 2R93F 4OIRE 2NVQF 2YU9F 4G7OE 3I4NF 4Q5SE 5FLMF 4Y52F 1SFOF 4MEYE 4XSXE 3H0GF 3GTKF 4ZH4E 3EQLE 5IYBF 5IP7F 5C4JF 5BYHE 2BE5E 2O5IE 2JA7F 1ZYRE 4BXXF 4MEXE 1I6VE 3HOVF 4A3EF 4A3GF 2WB1I 5TMFE 3HKZK 3S15F 2A68E 1HQME 4A3JF 4A3CF 5C3EF 4OIOE 3PO3F 4LK0E 4C2MF 4YFKE 5E17E 4C3JF 1SMYE 4KN7E 1Y1WF 4C3IF 3GTMF 3H3VG 2CW0E 3GTOF 4YFXE 3HOZF 1YNNK 3HOYF 1Y1VF 4X6AF 3FKIF 4A3LF 3GTPF 3HOXF 1R9TF 2A6HE 3PO2F 1TWHF 4BBRF 2B63F 3HOWF 1TWCF 4XSZE 3GTJF 4KMUE 2PMZK 1TWFF 1I3QF 4YFNE 3RZOF 3S1RF 2E2JF 2NVTF 2NVXF 5M5WF 4A3DF 4G7ZE 2JA8F 4Q4ZE 4A93F
chains in the Genus database with same CATH superfamily
3WODE 4BY1F 4BBRE 2B63E 5IYBE 3HOWE 5IP7E 5D4EE 5C4JE 4XLPE 2A6EE 4OINE 5TMCE 1TWFE 1I3QE 3RZOE 3S2DF 3S1NF 5M5YF 3S17F 1K83F 3S1RE 5C44F 2PPBE 2E2HF 3RZDF 2NVTE 4A3EE 3S1MF 2E2IF 3GTLF 2R7ZF 2NVXE 1WCMF 4A3JE 2JA8E 5M5XF 4LJZE 4A3DE 4BBSF 4A93E 3K7AF 4BY1E 2WAQK 4AYBK 5D4DE 4JK1E 3GTGF 4XLNE 2Y0SH 4OIQE 1I50F 4Y7NF 2A69E 4A3IF 5E18E 1Y1WE 3S2DE 4BY7F 4A3KF 1QKLA 3S1NE 5M5YE 3GTOE 4QIWK 1R9TE 5C44E 3HOYE 5C4XF 3RZDE 1IW7E 4A3LE 2E2IE 2JA5F 3DXJE 5M3MF 4LK1E 2R7ZE 3GTLE 3HKZH 1WCME 4BBSE 3PO2E 3S16F 1TWHE 4OIPE 3K7AE 4LLGE 1TWAF 3S14F 1TWCE 2O5JE 3GTGE 3CQZF 3GTJE 5M3FF 1I50E 3HOUF 4A3IE 4BY7E 4A3KE 5C4XE 5D4CE 2NVYF 5IYDF 4C3HF 2E2JE 3GTQF 3M4OF 3M3YF 2JA5E 4KN4E 5M5WE 4A3FF 3S2HF 4YG2E 4MQ9E 5IPLE 1EIKA 2JA6F 1TWAE 4G7HE 1DZFA 2R92F 3S14E 4A3BF 4GZYE 3H3VF 2WAQH 1I6HF 3CQZE 5M3FE 2VUMF 1YNJK 3I4MF 2Y0SI 5IYCF 5FJ8F 2PMZH 3S1QF 3S17E 1K83E 4A3MF 5IP9F 2E2HE 1TWGF 2R93F 2NVYE 4OIRE 4C3HE 2NVQF 2YU9F 3GTQE 3S1ME 3I4NF 4G7OE 4Q5SE 2KRXA 5FLMF 4Y52F 3S2HE 5M5XE 1SFOF 2JA6E 4A3BE 4MEYE 1I6HE 3HOXE 4Y7NE 4XSXE 3H0GF 3GTKF 3I4ME 5FJ8E 5IYCE 4ZH4E 3EQLE 2R93E 5IYBF 2NVQE 5IP7F 5C4JF 2YU9E 5BYHE 3I4NE 2BE5E 5M3ME 5FLME 2O5IE 4Y52E 1SFOE 3S16E 2JA7F 1ZYRE 2WB1H 4BXXF 4MEXE 1I6VE 3HOVF 4AYBH 4A3EF 2WB1I 5TMFE 4A3GF 3HKZK 3HOUE 3H0GE 3GTKE 2A68E 3S15F 1HQME 4A3JF 4A3CF 5C3EF 4OIOE 3PO3F 4LK0E 5IYDE 4C2MF 4QIWH 4YFKE 5E17E 3M4OE 3M3YE 4C3JF 1SMYE 4A3FE 4KN7E 1Y1WF 4C3IF 3GTMF 3H3VG 2CW0E 2JA7E 3GTOF 4YFXE 3HOZF 1YNNK 3PO2F 3HOYF 4BXXE 1Y1VF 3HOVE 2R92E 3FKIF 4A3LF 2VUME 4A3GE 4X6AF 3GTPF 3HOXF 1R9TF 3S15E 3S1QE 4A3CE 2A6HE 5C3EE 4A3ME 1TWHF 4BBRF 5IP9E 2B63F 1TWGE 3HOWF 1TWCF 4XSZE 4C2ME 3PO3E 3GTJF 4C3JE 4KMUE 2PMZK 1TWFF 1I3QF 4YFNE 3RZOF 4C3IE 3GTME 3S1RF 3HOZE 2E2JF 2NVTF 1Y1VE 4X6AE 3FKIE 3GTPE 2NVXF 5M5WF 4A3DF 4G7ZE 2JA8F 4Q4ZE 4A93F
chains in the Genus database with same CATH topology
3WODE 4BY1F 5D4EE 4XLPE 2A6EE 4OINE 5TMCE 3S2DF 3S1NF 5M5YF 3S17F 1K83F 5C44F 2PPBE 2E2HF 3RZDF 3S1MF 2E2IF 3GTLF 2R7ZF 1WCMF 4BBSF 5M5XF 4LJZE 3K7AF 2WAQK 4AYBK 5D4DE 4JK1E 3GTGF 4XLNE 4OIQE 1I50F 4Y7NF 2A69E 4A3IF 5E18E 4BY7F 4A3KF 1QKLA 5C4XF 4QIWK 1IW7E 2JA5F 3DXJE 5M3MF 4LK1E 3S16F 4OIPE 4LLGE 3S14F 1TWAF 2O5JE 3CQZF 5M3FF 3HOUF 5D4CE 2NVYF 5IYDF 4C3HF 3GTQF 3M4OF 3M3YF 4KN4E 4A3FF 3S2HF 4YG2E 4MQ9E 5IPLE 2JA6F 4G7HE 2R92F 4A3BF 4GZYE 1I6HF 2VUMF 1YNJK 3I4MF 2Y0SI 5IYCF 5FJ8F 3S1QF 4A3MF 5IP9F 1TWGF 2R93F 4OIRE 2NVQF 2YU9F 4G7OE 3I4NF 4Q5SE 2KRXA 5FLMF 4Y52F 1SFOF 4MEYE 4XSXE 3H0GF 3GTKF 4ZH4E 3EQLE 5IYBF 5IP7F 5C4JF 5BYHE 2BE5E 2O5IE 2JA7F 1ZYRE 4BXXF 4MEXE 1I6VE 3HOVF 4A3EF 4A3GF 2WB1I 5TMFE 3HKZK 3S15F 2A68E 1HQME 4A3JF 4A3CF 5C3EF 4OIOE 3PO3F 4LK0E 4C2MF 4YFKE 5E17E 4C3JF 1SMYE 4KN7E 1Y1WF 4C3IF 3GTMF 3H3VG 2CW0E 3GTOF 4YFXE 3HOZF 1YNNK 3HOYF 1Y1VF 4X6AF 3FKIF 4A3LF 3GTPF 3HOXF 1R9TF 2A6HE 3PO2F 1TWHF 4BBRF 2B63F 3HOWF 1TWCF 4XSZE 3GTJF 4KMUE 2PMZK 1TWFF 1I3QF 4YFNE 3RZOF 3S1RF 2E2JF 2NVTF 2NVXF 5M5WF 4A3DF 4G7ZE 2JA8F 4Q4ZE 4A93F
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WOD E;  4BY1 F;  5D4E E;  4XLP E;  2A6E E;  4OIN E;  5TMC E;  3S2D F;  3S1N F;  5M5Y F;  3S17 F;  1K83 F;  5C44 F;  2PPB E;  2E2H F;  3RZD F;  3S1M F;  2E2I F;  3GTL F;  2R7Z F;  1WCM F;  4BBS F;  5M5X F;  4LJZ E;  3K7A F;  2WAQ K;  4AYB K;  5D4D E;  4JK1 E;  3GTG F;  4XLN E;  4OIQ E;  1I50 F;  4Y7N F;  2A69 E;  4A3I F;  5E18 E;  4BY7 F;  4A3K F;  1QKL A;  5C4X F;  1IW7 E;  2JA5 F;  3DXJ E;  5M3M F;  4LK1 E;  3S16 F;  4OIP E;  4LLG E;  3S14 F;  1TWA F;  2O5J E;  3CQZ F;  5M3F F;  3HOU F;  5D4C E;  2NVY F;  5IYD F;  4C3H F;  3GTQ F;  3M4O F;  3M3Y F;  4KN4 E;  4A3F F;  3S2H F;  4YG2 E;  4MQ9 E;  5IPL E;  2JA6 F;  4G7H E;  2R92 F;  4A3B F;  4GZY E;  1I6H F;  2VUM F;  1YNJ K;  3I4M F;  2Y0S I;  5IYC F;  5FJ8 F;  3S1Q F;  4A3M F;  5IP9 F;  1TWG F;  2R93 F;  4OIR E;  2NVQ F;  2YU9 F;  4G7O E;  3I4N F;  4Q5S E;  5FLM F;  4Y52 F;  1SFO F;  4MEY E;  4XSX E;  3H0G F;  3GTK F;  4ZH4 E;  3EQL E;  5IYB F;  5IP7 F;  5C4J F;  5BYH E;  2BE5 E;  2O5I E;  2JA7 F;  1ZYR E;  4BXX F;  4MEX E;  1I6V E;  3HOV F;  4A3E F;  4A3G F;  2WB1 I;  5TMF E;  3HKZ K;  3S15 F;  2A68 E;  1HQM E;  4A3J F;  4A3C F;  5C3E F;  4OIO E;  3PO3 F;  4LK0 E;  4C2M F;  4YFK E;  5E17 E;  4C3J F;  1SMY E;  4KN7 E;  1Y1W F;  4C3I F;  3GTM F;  3H3V G;  2CW0 E;  3GTO F;  4YFX E;  3HOZ F;  1YNN K;  3HOY F;  1Y1V F;  4X6A F;  3FKI F;  4A3L F;  3GTP F;  3HOX F;  1R9T F;  2A6H E;  3PO2 F;  1TWH F;  4BBR F;  2B63 F;  3HOW F;  1TWC F;  4XSZ E;  3GTJ F;  4KMU E;  2PMZ K;  1TWF F;  1I3Q F;  4YFN E;  3RZO F;  3S1R F;  2E2J F;  2NVT F;  2NVX F;  5M5W F;  4A3D F;  4G7Z E;  2JA8 F;  4Q4Z E;  4A93 F; 
#chains in the Genus database with same CATH topology
 3WOD E;  4BY1 F;  4BBR E;  2B63 E;  5IYB E;  3HOW E;  5IP7 E;  5D4E E;  5C4J E;  4XLP E;  2A6E E;  4OIN E;  5TMC E;  1TWF E;  1I3Q E;  3RZO E;  3S2D F;  3S1N F;  5M5Y F;  3S17 F;  1K83 F;  3S1R E;  5C44 F;  2PPB E;  2E2H F;  3RZD F;  2NVT E;  4A3E E;  3S1M F;  2E2I F;  3GTL F;  2R7Z F;  2NVX E;  1WCM F;  4A3J E;  2JA8 E;  5M5X F;  4LJZ E;  4A3D E;  4BBS F;  4A93 E;  3K7A F;  4BY1 E;  2WAQ K;  4AYB K;  5D4D E;  4JK1 E;  3GTG F;  4XLN E;  2Y0S H;  4OIQ E;  1I50 F;  4Y7N F;  2A69 E;  4A3I F;  5E18 E;  1Y1W E;  3S2D E;  4BY7 F;  4A3K F;  1QKL A;  3S1N E;  5M5Y E;  3GTO E;  4QIW K;  1R9T E;  5C44 E;  3HOY E;  5C4X F;  3RZD E;  1IW7 E;  4A3L E;  2E2I E;  2JA5 F;  3DXJ E;  5M3M F;  4LK1 E;  2R7Z E;  3GTL E;  3HKZ H;  1WCM E;  4BBS E;  3PO2 E;  3S16 F;  1TWH E;  4OIP E;  3K7A E;  4LLG E;  1TWA F;  3S14 F;  1TWC E;  2O5J E;  3GTG E;  3CQZ F;  3GTJ E;  5M3F F;  1I50 E;  3HOU F;  4A3I E;  4BY7 E;  4A3K E;  5C4X E;  5D4C E;  2NVY F;  5IYD F;  4C3H F;  2E2J E;  3GTQ F;  3M4O F;  3M3Y F;  2JA5 E;  4KN4 E;  5M5W E;  4A3F F;  3S2H F;  4YG2 E;  4MQ9 E;  5IPL E;  1EIK A;  2JA6 F;  1TWA E;  4G7H E;  1DZF A;  2R92 F;  3S14 E;  4A3B F;  4GZY E;  3H3V F;  2WAQ H;  1I6H F;  3CQZ E;  5M3F E;  2VUM F;  1YNJ K;  3I4M F;  2Y0S I;  5IYC F;  5FJ8 F;  2PMZ H;  3S1Q F;  3S17 E;  1K83 E;  4A3M F;  5IP9 F;  2E2H E;  1TWG F;  2R93 F;  2NVY E;  4OIR E;  4C3H E;  2NVQ F;  2YU9 F;  3GTQ E;  3S1M E;  3I4N F;  4G7O E;  4Q5S E;  2KRX A;  5FLM F;  4Y52 F;  3S2H E;  5M5X E;  1SFO F;  2JA6 E;  4A3B E;  4MEY E;  1I6H E;  3HOX E;  4Y7N E;  4XSX E;  3H0G F;  3GTK F;  3I4M E;  5FJ8 E;  5IYC E;  4ZH4 E;  3EQL E;  2R93 E;  5IYB F;  2NVQ E;  5IP7 F;  5C4J F;  2YU9 E;  5BYH E;  3I4N E;  2BE5 E;  5M3M E;  5FLM E;  2O5I E;  4Y52 E;  1SFO E;  3S16 E;  2JA7 F;  1ZYR E;  2WB1 H;  4BXX F;  4MEX E;  1I6V E;  3HOV F;  4AYB H;  4A3E F;  2WB1 I;  5TMF E;  4A3G F;  3HKZ K;  3HOU E;  3H0G E;  3GTK E;  2A68 E;  3S15 F;  1HQM E;  4A3J F;  4A3C F;  5C3E F;  4OIO E;  3PO3 F;  4LK0 E;  5IYD E;  4C2M F;  4QIW H;  4YFK E;  5E17 E;  3M4O E;  3M3Y E;  4C3J F;  1SMY E;  4A3F E;  4KN7 E;  1Y1W F;  4C3I F;  3GTM F;  3H3V G;  2CW0 E;  2JA7 E;  3GTO F;  4YFX E;  3HOZ F;  1YNN K;  3PO2 F;  3HOY F;  4BXX E;  1Y1V F;  3HOV E;  2R92 E;  3FKI F;  4A3L F;  2VUM E;  4A3G E;  4X6A F;  3GTP F;  3HOX F;  1R9T F;  3S15 E;  3S1Q E;  4A3C E;  2A6H E;  5C3E E;  4A3M E;  1TWH F;  4BBR F;  5IP9 E;  2B63 F;  1TWG E;  3HOW F;  1TWC F;  4XSZ E;  4C2M E;  3PO3 E;  3GTJ F;  4C3J E;  4KMU E;  2PMZ K;  1TWF F;  1I3Q F;  4YFN E;  3RZO F;  4C3I E;  3GTM E;  3S1R F;  3HOZ E;  2E2J F;  2NVT F;  1Y1V E;  4X6A E;  3FKI E;  3GTP E;  2NVX F;  5M5W F;  4A3D F;  4G7Z E;  2JA8 F;  4Q4Z E;  4A93 F; 
#chains in the Genus database with same CATH homology
 3WOD E;  4BY1 F;  5D4E E;  4XLP E;  2A6E E;  4OIN E;  5TMC E;  3S2D F;  3S1N F;  5M5Y F;  3S17 F;  1K83 F;  5C44 F;  2PPB E;  2E2H F;  3RZD F;  3S1M F;  2E2I F;  3GTL F;  2R7Z F;  1WCM F;  4BBS F;  5M5X F;  4LJZ E;  3K7A F;  2WAQ K;  4AYB K;  5D4D E;  4JK1 E;  3GTG F;  4XLN E;  4OIQ E;  1I50 F;  4Y7N F;  2A69 E;  4A3I F;  5E18 E;  4BY7 F;  4A3K F;  1QKL A;  5C4X F;  4QIW K;  1IW7 E;  2JA5 F;  3DXJ E;  5M3M F;  4LK1 E;  3S16 F;  4OIP E;  4LLG E;  3S14 F;  1TWA F;  2O5J E;  3CQZ F;  5M3F F;  3HOU F;  5D4C E;  2NVY F;  5IYD F;  4C3H F;  3GTQ F;  3M4O F;  3M3Y F;  4KN4 E;  4A3F F;  3S2H F;  4YG2 E;  4MQ9 E;  5IPL E;  2JA6 F;  4G7H E;  2R92 F;  4A3B F;  4GZY E;  1I6H F;  2VUM F;  1YNJ K;  3I4M F;  2Y0S I;  5IYC F;  5FJ8 F;  3S1Q F;  4A3M F;  5IP9 F;  1TWG F;  2R93 F;  4OIR E;  2NVQ F;  2YU9 F;  4G7O E;  3I4N F;  4Q5S E;  2KRX A;  5FLM F;  4Y52 F;  1SFO F;  4MEY E;  4XSX E;  3H0G F;  3GTK F;  4ZH4 E;  3EQL E;  5IYB F;  5IP7 F;  5C4J F;  5BYH E;  2BE5 E;  2O5I E;  2JA7 F;  1ZYR E;  4BXX F;  4MEX E;  1I6V E;  3HOV F;  4A3E F;  4A3G F;  2WB1 I;  5TMF E;  3HKZ K;  3S15 F;  2A68 E;  1HQM E;  4A3J F;  4A3C F;  5C3E F;  4OIO E;  3PO3 F;  4LK0 E;  4C2M F;  4YFK E;  5E17 E;  4C3J F;  1SMY E;  4KN7 E;  1Y1W F;  4C3I F;  3GTM F;  3H3V G;  2CW0 E;  3GTO F;  4YFX E;  3HOZ F;  1YNN K;  3HOY F;  1Y1V F;  4X6A F;  3FKI F;  4A3L F;  3GTP F;  3HOX F;  1R9T F;  2A6H E;  3PO2 F;  1TWH F;  4BBR F;  2B63 F;  3HOW F;  1TWC F;  4XSZ E;  3GTJ F;  4KMU E;  2PMZ K;  1TWF F;  1I3Q F;  4YFN E;  3RZO F;  3S1R F;  2E2J F;  2NVT F;  2NVX F;  5M5W F;  4A3D F;  4G7Z E;  2JA8 F;  4Q4Z E;  4A93 F; 
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similar chains in the Genus database (?% sequence similarity)
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