2E2LA

Helicobacter pylori formamidase amif contains a fine-tuned cysteine-glutamate-lysine catalytic triad
Total Genus 97
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
322
structure length
317
Chain Sequence
GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPWNPIEPWYPGDLGMPVCEGPGGSKLAVCISHDGMIPELAREAAYKGCNVYIRISGYSTQVNDQWILTNRSNAWHNLMYTVSVNLAGYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENNIYNLGHRGYVAKPGGEHDAGLTYIKDLAAGKYKLPWEDHMKIKDGSIYGYPTTGGRFGK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of Helicobacter pylori formamidase AmiF reveals a cysteine-glutamate-lysine catalytic triad
pubmed doi rcsb
molecule tags Hydrolase
source organism Helicobacter pylori
molecule keywords Formamidase
total genus 97
structure length 317
sequence length 322
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.5.1.49: Formamidase.
pdb deposition date 2006-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 2e2lA01
3SEQA 4HG3A 5KHAA 1FO6A 5H8LA 3KLCA 2GGKA 2UXYA 4KZFA 3WUYA 3KI8A 3IVZA 2VHIA 2PLQA 3N05A 4GYNA 4F4HA 4IZVA 2DYVA 4CYFA 4LF0A 4IZUA 2E2LA 3SDBA 4GYLA 2E2KA 1J31A 1UF8A 3ILVA 3P8KA 3IW3A 3HKXA 4CYYA 1ERZA 4IZWA 2GGLA 1UF4A 1F89A 3SYTA 1EMSA 1UF7A 5H8KA 2VHHA 2DYUA 5JQNA 1UF5A 2E11A 4IZSA 4HG5A 4H5UA 4HGDA 5H8IA 4CYGA 2W1VA 4IZTA 3SEZA 5H8JA 3SZGA 3DLAA
chains in the Genus database with same CATH superfamily
3SEQA 4HG3A 5KHAA 1FO6A 5H8LA 3KLCA 2GGKA 2UXYA 4KZFA 3WUYA 3KI8A 3IVZA 2VHIA 2PLQA 3N05A 4GYNA 4F4HA 4IZVA 2DYVA 4CYFA 4LF0A 4IZUA 2E2LA 3SDBA 4GYLA 2E2KA 1J31A 1UF8A 3ILVA 3P8KA 3IW3A 3HKXA 4CYYA 1ERZA 4IZWA 2GGLA 1UF4A 1F89A 3SYTA 1EMSA 1UF7A 5H8KA 2VHHA 2DYUA 5JQNA 1UF5A 2E11A 4IZSA 4HG5A 4H5UA 4HGDA 5H8IA 4CYGA 2W1VA 4IZTA 3SEZA 5H8JA 3SZGA 3DLAA
chains in the Genus database with same CATH topology
3SEQA 4HG3A 5KHAA 1FO6A 5H8LA 3KLCA 2GGKA 2UXYA 4KZFA 3WUYA 3KI8A 3IVZA 2VHIA 2PLQA 3N05A 4GYNA 4F4HA 4IZVA 2DYVA 4CYFA 4LF0A 4IZUA 2E2LA 3SDBA 4GYLA 2E2KA 1J31A 1UF8A 3ILVA 3P8KA 3IW3A 3HKXA 4CYYA 1ERZA 4IZWA 2GGLA 1UF4A 1F89A 3SYTA 1EMSA 1UF7A 5H8KA 2VHHA 2DYUA 5JQNA 1UF5A 2E11A 4IZSA 4HG5A 4H5UA 4HGDA 5H8IA 4CYGA 2W1VA 4IZTA 3SEZA 5H8JA 3SZGA 3DLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SEQ A;  4HG3 A;  5KHA A;  1FO6 A;  5H8L A;  3KLC A;  2GGK A;  2UXY A;  4KZF A;  3WUY A;  3KI8 A;  3IVZ A;  2VHI A;  2PLQ A;  3N05 A;  4GYN A;  4F4H A;  4IZV A;  2DYV A;  4CYF A;  4LF0 A;  4IZU A;  2E2L A;  3SDB A;  4GYL A;  2E2K A;  1J31 A;  1UF8 A;  3ILV A;  3P8K A;  3IW3 A;  3HKX A;  4CYY A;  1ERZ A;  4IZW A;  2GGL A;  1UF4 A;  1F89 A;  3SYT A;  1EMS A;  1UF7 A;  5H8K A;  2VHH A;  2DYU A;  5JQN A;  1UF5 A;  2E11 A;  4IZS A;  4HG5 A;  4H5U A;  4HGD A;  5H8I A;  4CYG A;  2W1V A;  4IZT A;  3SEZ A;  5H8J A;  3SZG A;  3DLA A; 
#chains in the Genus database with same CATH topology
 3SEQ A;  4HG3 A;  5KHA A;  1FO6 A;  5H8L A;  3KLC A;  2GGK A;  2UXY A;  4KZF A;  3WUY A;  3KI8 A;  3IVZ A;  2VHI A;  2PLQ A;  3N05 A;  4GYN A;  4F4H A;  4IZV A;  2DYV A;  4CYF A;  4LF0 A;  4IZU A;  2E2L A;  3SDB A;  4GYL A;  2E2K A;  1J31 A;  1UF8 A;  3ILV A;  3P8K A;  3IW3 A;  3HKX A;  4CYY A;  1ERZ A;  4IZW A;  2GGL A;  1UF4 A;  1F89 A;  3SYT A;  1EMS A;  1UF7 A;  5H8K A;  2VHH A;  2DYU A;  5JQN A;  1UF5 A;  2E11 A;  4IZS A;  4HG5 A;  4H5U A;  4HGD A;  5H8I A;  4CYG A;  2W1V A;  4IZT A;  3SEZ A;  5H8J A;  3SZG A;  3DLA A; 
#chains in the Genus database with same CATH homology
 3SEQ A;  4HG3 A;  5KHA A;  1FO6 A;  5H8L A;  3KLC A;  2GGK A;  2UXY A;  4KZF A;  3WUY A;  3KI8 A;  3IVZ A;  2VHI A;  2PLQ A;  3N05 A;  4GYN A;  4F4H A;  4IZV A;  2DYV A;  4CYF A;  4LF0 A;  4IZU A;  2E2L A;  3SDB A;  4GYL A;  2E2K A;  1J31 A;  1UF8 A;  3ILV A;  3P8K A;  3IW3 A;  3HKX A;  4CYY A;  1ERZ A;  4IZW A;  2GGL A;  1UF4 A;  1F89 A;  3SYT A;  1EMS A;  1UF7 A;  5H8K A;  2VHH A;  2DYU A;  5JQN A;  1UF5 A;  2E11 A;  4IZS A;  4HG5 A;  4H5U A;  4HGD A;  5H8I A;  4CYG A;  2W1V A;  4IZT A;  3SEZ A;  5H8J A;  3SZG A;  3DLA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...