2EHEA

Solution structure of the first lim domain from human four and a half lim domains protein 3
Total Genus 4

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
82
structure length
82
Chain Sequence
GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (17-18)S2 (23-24)EMPTYTIV1 (18-21)TIV5 (40-43)TIV3 (26-29)TIV4 (34-37)TIV6 (41-44)TIV10 (53-56)S3 (45-46)S4 (51-52)S5 (58-61)TIV11 (61-64)S6 (64-67)TI1 (67-70)TIV12 (68-71)3H1 (75-77)Updating...
connected with : NaN
publication title Solution structure of the first LIM domain from human four and a half LIM domains protein 3
rcsb
molecule keywords Four and a half LIM domains 3
molecule tags Structural protein
source organism Homo sapiens
total genus 4
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2007-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2eheA00
4HI9B 2D8ZA 1X6AA 2L6ZC 1WIGA 2CURA 2CUPA 2EHEA 1B8TA 1X4LA 2EGQA 1CXXA 1IBIA 2MIUA 2DJ7A 2D8XA 2D8YA 2DLOA 1X62A 3MMKA 2CORA 2O13A 1WYHA 2MBVA 2L6YB 4KFZA 1U5SB 1X3HA 4HI8B 2IYBE 3F6QB 1V6GA 1G47A 2YPAC 2O10A 2CU8A 1NYPA 1X64A 1QLIA 2LXDA 1RUTX 2XJZA 1X61A 2CO8A 1IMLA 2XQNT 1CTLA 2CUQA 1J2OA 2DFYC 1X63A 4JCJA 2L4ZA 2XJYA 1X68A 1M3VA 2JTNA 3IXEB 2KBXB 2LZUA 2DARA 1A7IA
chains in the Genus database with same CATH superfamily
5FXWA 2CURA 5LKUA 2EHEA 4UF0B 1IBIA 4BHWA 2D8XA 3AVRA 1X62A 3MMKA 5FXXA 4KFZA 5LKXA 1G47A 3NILA 2LXDA 1X61A 1IMLA 2XQNT 1CTLA 1X68A 2IYBE 5FXVA 5LKZA 1X6AA 1X4LA 1CXXA 2DJ7A 3AVSA 5FY1A 2MBVA 2L6YB 5LKTA 1X3HA 4HI8B 1V6GA 2O10A 2CU8A 3NIJA 1X64A 1RUTX 2XJZA 2CUQA 1J2OA 2KBXB 2LZUA 5A1LA 4HI9B 2D8ZA 3NIKA 3ZLIA 2EGQA 2XUEA 2MIUA 4EZHA 5FXZA 2CORA 2O13A 1WYHA 1U5SB 5FY7A 3F6QB 3NISA 4UF0A 2YPAC 3NINA 1QLIA 3ZPOA 3NIHA 2DFYC 4JCJA 3NIMA 2XJYA 2DARA 5FYMA 2L6ZC 1WIGA 2CUPA 1B8TA 2D8YA 2DLOA 4EYUA 4EZ4A 5FP3A 5FY0A 1NYPA 2CO8A 1X63A 2L4ZA 4ASKA 1M3VA 2JTNA 3IXEB 1A7IA
chains in the Genus database with same CATH topology
5FXWA 2CURA 5LKUA 2EHEA 4UF0B 1IBIA 4BHWA 2D8XA 3AVRA 1X62A 3MMKA 5FXXA 4KFZA 5LKXA 1G47A 3NILA 2LXDA 1X61A 1IMLA 2XQNT 1CTLA 1X68A 2IYBE 5FXVA 5LKZA 1X6AA 1X4LA 1CXXA 2DJ7A 3AVSA 5FY1A 2MBVA 2L6YB 5LKTA 1X3HA 4HI8B 1V6GA 2O10A 2CU8A 3NIJA 1X64A 1RUTX 2XJZA 2CUQA 1J2OA 2KBXB 2LZUA 5A1LA 4HI9B 2D8ZA 3NIKA 3ZLIA 2EGQA 2XUEA 2MIUA 4EZHA 5FXZA 2CORA 2O13A 1WYHA 1U5SB 5FY7A 3F6QB 3NISA 4UF0A 2YPAC 3NINA 1QLIA 3ZPOA 3NIHA 2DFYC 4JCJA 3NIMA 2XJYA 2DARA 5FYMA 2L6ZC 1WIGA 2CUPA 1B8TA 2D8YA 2DLOA 4EYUA 4EZ4A 5FP3A 5FY0A 1NYPA 2CO8A 1X63A 2L4ZA 4ASKA 1M3VA 2JTNA 3IXEB 1A7IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HI9 B;  2D8Z A;  1X6A A;  2L6Z C;  1WIG A;  2CUR A;  2CUP A;  2EHE A;  1B8T A;  1X4L A;  2EGQ A;  1CXX A;  1IBI A;  2MIU A;  2DJ7 A;  2D8X A;  2D8Y A;  2DLO A;  1X62 A;  3MMK A;  2COR A;  2O13 A;  1WYH A;  2MBV A;  2L6Y B;  4KFZ A;  1U5S B;  1X3H A;  4HI8 B;  2IYB E;  3F6Q B;  1V6G A;  1G47 A;  2YPA C;  2O10 A;  2CU8 A;  1NYP A;  1X64 A;  1QLI A;  2LXD A;  1RUT X;  2XJZ A;  1X61 A;  2CO8 A;  1IML A;  2XQN T;  1CTL A;  2CUQ A;  1J2O A;  2DFY C;  1X63 A;  4JCJ A;  2L4Z A;  2XJY A;  1X68 A;  1M3V A;  2JTN A;  3IXE B;  2KBX B;  2LZU A;  2DAR A;  1A7I A; 
#chains in the Genus database with same CATH topology
 5FXW A;  2CUR A;  5LKU A;  2EHE A;  4UF0 B;  1IBI A;  4BHW A;  2D8X A;  3AVR A;  1X62 A;  3MMK A;  5FXX A;  4KFZ A;  5LKX A;  1G47 A;  3NIL A;  2LXD A;  1X61 A;  1IML A;  2XQN T;  1CTL A;  1X68 A;  2IYB E;  5FXV A;  5LKZ A;  1X6A A;  1X4L A;  1CXX A;  2DJ7 A;  3AVS A;  5FY1 A;  2MBV A;  2L6Y B;  5LKT A;  1X3H A;  4HI8 B;  1V6G A;  2O10 A;  2CU8 A;  3NIJ A;  1X64 A;  1RUT X;  2XJZ A;  2CUQ A;  1J2O A;  2KBX B;  2LZU A;  5A1L A;  4HI9 B;  2D8Z A;  3NIK A;  3ZLI A;  2EGQ A;  2XUE A;  2MIU A;  4EZH A;  5FXZ A;  2COR A;  2O13 A;  1WYH A;  1U5S B;  5FY7 A;  3F6Q B;  3NIS A;  4UF0 A;  2YPA C;  3NIN A;  1QLI A;  3ZPO A;  3NIH A;  2DFY C;  4JCJ A;  3NIM A;  2XJY A;  2DAR A;  5FYM A;  2L6Z C;  1WIG A;  2CUP A;  1B8T A;  2D8Y A;  2DLO A;  4EYU A;  4EZ4 A;  5FP3 A;  5FY0 A;  1NYP A;  2CO8 A;  1X63 A;  2L4Z A;  4ASK A;  1M3V A;  2JTN A;  3IXE B;  1A7I A; 
#chains in the Genus database with same CATH homology
 5FXW A;  2CUR A;  5LKU A;  2EHE A;  4UF0 B;  1IBI A;  4BHW A;  2D8X A;  3AVR A;  1X62 A;  3MMK A;  5FXX A;  4KFZ A;  5LKX A;  1G47 A;  3NIL A;  2LXD A;  1X61 A;  1IML A;  2XQN T;  1CTL A;  1X68 A;  2IYB E;  5FXV A;  5LKZ A;  1X6A A;  1X4L A;  1CXX A;  2DJ7 A;  3AVS A;  5FY1 A;  2MBV A;  2L6Y B;  5LKT A;  1X3H A;  4HI8 B;  1V6G A;  2O10 A;  2CU8 A;  3NIJ A;  1X64 A;  1RUT X;  2XJZ A;  2CUQ A;  1J2O A;  2KBX B;  2LZU A;  5A1L A;  4HI9 B;  2D8Z A;  3NIK A;  3ZLI A;  2EGQ A;  2XUE A;  2MIU A;  4EZH A;  5FXZ A;  2COR A;  2O13 A;  1WYH A;  1U5S B;  5FY7 A;  3F6Q B;  3NIS A;  4UF0 A;  2YPA C;  3NIN A;  1QLI A;  3ZPO A;  3NIH A;  2DFY C;  4JCJ A;  3NIM A;  2XJY A;  2DAR A;  5FYM A;  2L6Z C;  1WIG A;  2CUP A;  1B8T A;  2D8Y A;  2DLO A;  4EYU A;  4EZ4 A;  5FP3 A;  5FY0 A;  1NYP A;  2CO8 A;  1X63 A;  2L4Z A;  4ASK A;  1M3V A;  2JTN A;  3IXE B;  1A7I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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