The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
33
|
sequence length |
120
|
structure length |
120
|
Chain Sequence |
DPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAINNYAQKLCTFSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA
pubmed doi rcsb |
| molecule tags |
Dna binding protein/dna
|
| source organism |
Simian virus 40
|
| molecule keywords |
24-nt PEN element of the SV40 DNA origin
|
| total genus |
33
|
| structure length |
120
|
| sequence length |
120
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2006-10-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02217 | T_Ag_DNA_bind | Origin of replication binding protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1; Chain: A, | Replication Protein E1; Chain: A, |
#chains in the Genus database with same CATH superfamily 3QN2 A; 4GDF A; 1UUT A; 2IF9 A; 4LMD A; 1Z1D B; 2ITJ A; 5DCX A; 2NTC A; 3QFQ A; 3QK2 A; 2NL8 A; 5D9I A; 1M55 A; 4ZQ9 A; 1L2M A; 2HW0 A; 1RZ9 A; 2IPR A; 5CYN A; 4FGN A; 2ITL A; 4NBP A; 2TBD A; 4FB3 A; 4ZO0 A; 1L5I A; 2FUF A; 1TBD A; 4LIF A; 5BYG A; #chains in the Genus database with same CATH topology 3QN2 A; 4GDF A; 1UUT A; 2IF9 A; 4LMD A; 1Z1D B; 2ITJ A; 5DCX A; 2NTC A; 3QFQ A; 3DKX A; 3QK2 A; 2NL8 A; 5D9I A; 4U87 A; 1M55 A; 1KSX A; 4ZQ9 A; 1L2M A; 2HW0 A; 1RZ9 A; 2IPR A; 5CYN A; 4FGN A; 2ITL A; 4NBP A; 2TBD A; 3DKY A; 4FB3 A; 4ZO0 A; 1L5I A; 1R9W A; 1KSY A; 2FUF A; 1TBD A; 4KW3 A; 4LIF A; 5BYG A; 1F08 A; #chains in the Genus database with same CATH homology 3QN2 A; 4GDF A; 1UUT A; 2IF9 A; 4LMD A; 1Z1D B; 2ITJ A; 5DCX A; 2NTC A; 3QFQ A; 3DKX A; 3QK2 A; 2NL8 A; 5D9I A; 4U87 A; 1M55 A; 1KSX A; 4ZQ9 A; 1L2M A; 2HW0 A; 1RZ9 A; 2IPR A; 5CYN A; 4FGN A; 2ITL A; 4NBP A; 2TBD A; 3DKY A; 4FB3 A; 4ZO0 A; 1L5I A; 1R9W A; 1KSY A; 2FUF A; 1TBD A; 4KW3 A; 4LIF A; 5BYG A; 1F08 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
