2J4OA

Structure of tab1
Total Genus 114
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
355
structure length
355
Chain Sequence
SWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGYPLG
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (16-19)AH9 (323-343)TI1 (17-20)S1 (27-32)TI2 (18-21)S2 (35-37)S11 (271-277)EMPTYS4 (51-58)TIV2 (38-41)AH1 (74-87)TIV8 (88-91)TIV7 (87-90)TIV9 (89-92)3H3 (256-258)TIV10 (94-97)AH2 (97-134)AH5 (225-231)TIV16 (233-236)TIV11 (136-139)3H1 (146-148)AH3 (149-162)TI5 (258-261)S6 (165-174)TII1 (278-281)AH7 (290-300)S7 (177-183)TVIII3 (264-267)S8 (187-193)AH6 (246-251)S9 (198-202)TI4 (208-211)AH4 (212-220)TVIII2 (239-242)TI'1 (234-237)S10 (243-244)TIV17 (261-264)TIV18 (352-355)S13 (354-355)TII2 (301-304)AH8 (304-319)3H4 (348-351)S5 (62-71)TVIII1 (91-94)TIV12 (140-143)TIV13 (173-176)3H2 (252-254)S12 (283-288)TIV3 (58-61)TIV5 (70-73)TIV15 (194-197)Updating...
connected with : NaN
molecule tags Protein binding
source organism Homo sapiens
publication title Tak1-Binding Protein 1 is a Pseudophosphatase.
pubmed doi rcsb
molecule keywords MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING
total genus 114
structure length 355
sequence length 355
ec nomenclature
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00481 PP2C Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 2j4oA00
3NMVB 3T9QA 2V06A 3FXOA 3KB3B 2IRMA 4DA1A 3FXMA 4WVOB 3T91A 4DS8B 1A6QA 2P8EA 3W40A 5ITIA 3NMTB 5JO1B 3KE6A 2JFTA 2JFRA 3N3CA 3KDJB 4LA7B 3ES2A 4YZGA 3UJGB 2POPA 4RAGA 3RT0A 4RAFA 4YZHA 2IQ1A 4LGAB 3FXKA 2POMA 4LGBB 3FXLA 4JNDA 2J86A 2I44A 4OICB 5JO2B 3EQ2A 3D8KA 2XZVA 1TXOA 4RA2A 2J4OA 2JFSA 3FXJA 2J82A 3NMNB 2ISNA 3F79A 3UJKA 2PNQA 5F1MA 2I0OA 5D2UA 3JRQA 3ZT9A 3W41A 4N0GA 3QN1B 4LG5B 3W45A 3UJLB 3RNRA 3W42A 3ZVUB 2Y09A 3W43A 3PU9A 3W44A 2CM1A 3MQ3A 2PK0A
chains in the Genus database with same CATH superfamily
3NMVB 3T9QA 2V06A 3FXOA 3KB3B 2IRMA 4DA1A 3FXMA 4WVOB 3T91A 4DS8B 1A6QA 2P8EA 3W40A 5ITIA 4IIPA 3NMTB 5JO1B 3KE6A 2JFTA 2JFRA 3N3CA 3KDJB 4LA7B 3ES2A 4YZGA 3UJGB 2POPA 4RAGA 3RT0A 4RAFA 4YZHA 2IQ1A 4LGAB 3FXKA 2POMA 4LGBB 3FXLA 4JNDA 2J86A 2I44A 4OICB 5JO2B 3EQ2A 3D8KA 2XZVA 1TXOA 4RA2A 2J4OA 2JFSA 3FXJA 2J82A 3NMNB 2ISNA 3F79A 3UJKA 2PNQA 5F1MA 2I0OA 5D2UA 3JRQA 3ZT9A 3W41A 4N0GA 3QN1B 4LG5B 3W45A 3UJLB 3RNRA 3W42A 3ZVUB 4IIKA 2Y09A 3W43A 3PU9A 3W44A 2CM1A 3MQ3A 2PK0A
chains in the Genus database with same CATH topology
3NMVB 3T9QA 2V06A 3FXOA 3KB3B 2IRMA 4DA1A 3FXMA 4WVOB 3T91A 4DS8B 1A6QA 2P8EA 3W40A 5ITIA 3NMTB 5JO1B 3KE6A 2JFTA 2JFRA 3N3CA 3KDJB 4LA7B 3ES2A 4YZGA 3UJGB 2POPA 4RAGA 3RT0A 4RAFA 4YZHA 2IQ1A 4LGAB 3FXKA 2POMA 4LGBB 3FXLA 4JNDA 2J86A 2I44A 4OICB 5JO2B 3EQ2A 3D8KA 2XZVA 1TXOA 4RA2A 2J4OA 2JFSA 3FXJA 2J82A 3NMNB 2ISNA 3F79A 3UJKA 2PNQA 5F1MA 2I0OA 5D2UA 3JRQA 3ZT9A 3W41A 4N0GA 3QN1B 4LG5B 3W45A 3UJLB 3RNRA 3W42A 3ZVUB 2Y09A 3W43A 3PU9A 3W44A 2CM1A 3MQ3A 2PK0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NMV B;  3T9Q A;  2V06 A;  3FXO A;  3KB3 B;  2IRM A;  4DA1 A;  3FXM A;  4WVO B;  3T91 A;  4DS8 B;  1A6Q A;  2P8E A;  3W40 A;  5ITI A;  3NMT B;  5JO1 B;  3KE6 A;  2JFT A;  2JFR A;  3N3C A;  3KDJ B;  4LA7 B;  3ES2 A;  4YZG A;  3UJG B;  2POP A;  4RAG A;  3RT0 A;  4RAF A;  4YZH A;  2IQ1 A;  4LGA B;  3FXK A;  2POM A;  4LGB B;  3FXL A;  4JND A;  2J86 A;  2I44 A;  4OIC B;  5JO2 B;  3EQ2 A;  3D8K A;  2XZV A;  1TXO A;  4RA2 A;  2J4O A;  2JFS A;  3FXJ A;  2J82 A;  3NMN B;  2ISN A;  3F79 A;  3UJK A;  2PNQ A;  5F1M A;  2I0O A;  5D2U A;  3JRQ A;  3ZT9 A;  3W41 A;  4N0G A;  3QN1 B;  4LG5 B;  3W45 A;  3UJL B;  3RNR A;  3W42 A;  3ZVU B;  2Y09 A;  3W43 A;  3PU9 A;  3W44 A;  2CM1 A;  3MQ3 A;  2PK0 A; 
#chains in the Genus database with same CATH topology
 3NMV B;  3T9Q A;  2V06 A;  3FXO A;  3KB3 B;  2IRM A;  4DA1 A;  3FXM A;  4WVO B;  3T91 A;  4DS8 B;  1A6Q A;  2P8E A;  3W40 A;  5ITI A;  4IIP A;  3NMT B;  5JO1 B;  3KE6 A;  2JFT A;  2JFR A;  3N3C A;  3KDJ B;  4LA7 B;  3ES2 A;  4YZG A;  3UJG B;  2POP A;  4RAG A;  3RT0 A;  4RAF A;  4YZH A;  2IQ1 A;  4LGA B;  3FXK A;  2POM A;  4LGB B;  3FXL A;  4JND A;  2J86 A;  2I44 A;  4OIC B;  5JO2 B;  3EQ2 A;  3D8K A;  2XZV A;  1TXO A;  4RA2 A;  2J4O A;  2JFS A;  3FXJ A;  2J82 A;  3NMN B;  2ISN A;  3F79 A;  3UJK A;  2PNQ A;  5F1M A;  2I0O A;  5D2U A;  3JRQ A;  3ZT9 A;  3W41 A;  4N0G A;  3QN1 B;  4LG5 B;  3W45 A;  3UJL B;  3RNR A;  3W42 A;  3ZVU B;  4IIK A;  2Y09 A;  3W43 A;  3PU9 A;  3W44 A;  2CM1 A;  3MQ3 A;  2PK0 A; 
#chains in the Genus database with same CATH homology
 3NMV B;  3T9Q A;  2V06 A;  3FXO A;  3KB3 B;  2IRM A;  4DA1 A;  3FXM A;  4WVO B;  3T91 A;  4DS8 B;  1A6Q A;  2P8E A;  3W40 A;  5ITI A;  3NMT B;  5JO1 B;  3KE6 A;  2JFT A;  2JFR A;  3N3C A;  3KDJ B;  4LA7 B;  3ES2 A;  4YZG A;  3UJG B;  2POP A;  4RAG A;  3RT0 A;  4RAF A;  4YZH A;  2IQ1 A;  4LGA B;  3FXK A;  2POM A;  4LGB B;  3FXL A;  4JND A;  2J86 A;  2I44 A;  4OIC B;  5JO2 B;  3EQ2 A;  3D8K A;  2XZV A;  1TXO A;  4RA2 A;  2J4O A;  2JFS A;  3FXJ A;  2J82 A;  3NMN B;  2ISN A;  3F79 A;  3UJK A;  2PNQ A;  5F1M A;  2I0O A;  5D2U A;  3JRQ A;  3ZT9 A;  3W41 A;  4N0G A;  3QN1 B;  4LG5 B;  3W45 A;  3UJL B;  3RNR A;  3W42 A;  3ZVU B;  2Y09 A;  3W43 A;  3PU9 A;  3W44 A;  2CM1 A;  3MQ3 A;  2PK0 A; 
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