4OICB

Crystal structrual of a soluble protein
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
321
structure length
305
Chain Sequence
b'SVFAVECVPLWGHKSICGRRPEMEDAVVAVSRFFDIPLWMLTGNSVVDGLDPMSFRLPAHFFGVYDGHGGAQVANYCRERLHAALVEELSRIEGSVSGANLGSVEFKKKWEQAFVDCFSRVDEEVGGNAVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGSSDPAAEAAAECLSKLALQKGSKDNISVIVVDLKAH'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Bet v I allergen-like
publication title Identification and characterization of ABA receptors in Oryza sativa
pubmed doi rcsb
source organism Oryza sativa japonica group
molecule tags Hormone receptor/hydrolase
total genus 98
structure length 305
sequence length 321
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2014-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00481 PP2C Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 4oicB00
2PNQA 3KE6A 4JNDA 2POPA 3PU9A 4OICB 2P8EA 3UJKA 3MQ3A 3NMTB 3RT0A 4RAGA 4RA2A 3F79A 3W40A 3RNRA 4LGAB 3EQ2A 4YZHA 3NMVB 4N0GA 4LA7B 3W45A 5ITIA 2I44A 2PK0A 3UJLB 3KDJB 3FXJA 3ZVUB 1TXOA 4DA1A 3UJGB 3D8KA 3N3CA 3FXLA 2Y09A 3T91A 3T9QA 4LGBB 2ISNA 5D2UA 3W42A 3ZT9A 2J82A 3FXMA 4WVOB 2J86A 4LG5B 3FXOA 1A6QA 3QN1B 3W44A 3ES2A 2JFTA 2IRMA 5JO1B 2JFRA 5JO2B 3NMNB 2I0OA 2CM1A 2IQ1A 4RAFA 2V06A 3W41A 3JRQA 2J4OA 5F1MA 4YZGA 3FXKA 3KB3B 2POMA 3W43A 2XZVA 4DS8B 2JFSA
chains in the Genus database with same CATH superfamily
2PNQA 3KE6A 4JNDA 2POPA 3PU9A 4OICB 2P8EA 3UJKA 3MQ3A 3NMTB 3RT0A 4RAGA 4RA2A 3F79A 3W40A 3RNRA 4LGAB 3EQ2A 4YZHA 3NMVB 4N0GA 4IIPA 4LA7B 3W45A 5ITIA 2I44A 2PK0A 3UJLB 3KDJB 4IIKA 3FXJA 3ZVUB 1TXOA 4DA1A 3UJGB 3D8KA 3N3CA 3FXLA 2Y09A 3T91A 3T9QA 4LGBB 2ISNA 5D2UA 3W42A 3ZT9A 2J82A 3FXMA 4WVOB 2J86A 4LG5B 3FXOA 1A6QA 3QN1B 3W44A 3ES2A 2JFTA 2IRMA 5JO1B 2JFRA 5JO2B 3NMNB 2I0OA 2CM1A 2IQ1A 4RAFA 2V06A 3W41A 3JRQA 2J4OA 5F1MA 4YZGA 3FXKA 3KB3B 2POMA 3W43A 2XZVA 4DS8B 2JFSA
chains in the Genus database with same CATH topology
2PNQA 3KE6A 4JNDA 2POPA 3PU9A 4OICB 2P8EA 3UJKA 3MQ3A 3NMTB 3RT0A 4RAGA 4RA2A 3F79A 3W40A 3RNRA 4LGAB 3EQ2A 4YZHA 3NMVB 4N0GA 4LA7B 3W45A 5ITIA 2I44A 2PK0A 3UJLB 3KDJB 3FXJA 3ZVUB 1TXOA 4DA1A 3UJGB 3D8KA 3N3CA 3FXLA 2Y09A 3T91A 3T9QA 4LGBB 2ISNA 5D2UA 3W42A 3ZT9A 2J82A 3FXMA 4WVOB 2J86A 4LG5B 3FXOA 1A6QA 3QN1B 3W44A 3ES2A 2JFTA 2IRMA 5JO1B 2JFRA 5JO2B 3NMNB 2I0OA 2CM1A 2IQ1A 4RAFA 2V06A 3W41A 3JRQA 2J4OA 5F1MA 4YZGA 3FXKA 3KB3B 2POMA 3W43A 2XZVA 4DS8B 2JFSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PNQ A;  3KE6 A;  4JND A;  2POP A;  3PU9 A;  4OIC B;  2P8E A;  3UJK A;  3MQ3 A;  3NMT B;  3RT0 A;  4RAG A;  4RA2 A;  3F79 A;  3W40 A;  3RNR A;  4LGA B;  3EQ2 A;  4YZH A;  3NMV B;  4N0G A;  4LA7 B;  3W45 A;  5ITI A;  2I44 A;  2PK0 A;  3UJL B;  3KDJ B;  3FXJ A;  3ZVU B;  1TXO A;  4DA1 A;  3UJG B;  3D8K A;  3N3C A;  3FXL A;  2Y09 A;  3T91 A;  3T9Q A;  4LGB B;  2ISN A;  5D2U A;  3W42 A;  3ZT9 A;  2J82 A;  3FXM A;  4WVO B;  2J86 A;  4LG5 B;  3FXO A;  1A6Q A;  3QN1 B;  3W44 A;  3ES2 A;  2JFT A;  2IRM A;  5JO1 B;  2JFR A;  5JO2 B;  3NMN B;  2I0O A;  2CM1 A;  2IQ1 A;  4RAF A;  2V06 A;  3W41 A;  3JRQ A;  2J4O A;  5F1M A;  4YZG A;  3FXK A;  3KB3 B;  2POM A;  3W43 A;  2XZV A;  4DS8 B;  2JFS A; 
#chains in the Genus database with same CATH topology
 2PNQ A;  3KE6 A;  4JND A;  2POP A;  3PU9 A;  4OIC B;  2P8E A;  3UJK A;  3MQ3 A;  3NMT B;  3RT0 A;  4RAG A;  4RA2 A;  3F79 A;  3W40 A;  3RNR A;  4LGA B;  3EQ2 A;  4YZH A;  3NMV B;  4N0G A;  4IIP A;  4LA7 B;  3W45 A;  5ITI A;  2I44 A;  2PK0 A;  3UJL B;  3KDJ B;  4IIK A;  3FXJ A;  3ZVU B;  1TXO A;  4DA1 A;  3UJG B;  3D8K A;  3N3C A;  3FXL A;  2Y09 A;  3T91 A;  3T9Q A;  4LGB B;  2ISN A;  5D2U A;  3W42 A;  3ZT9 A;  2J82 A;  3FXM A;  4WVO B;  2J86 A;  4LG5 B;  3FXO A;  1A6Q A;  3QN1 B;  3W44 A;  3ES2 A;  2JFT A;  2IRM A;  5JO1 B;  2JFR A;  5JO2 B;  3NMN B;  2I0O A;  2CM1 A;  2IQ1 A;  4RAF A;  2V06 A;  3W41 A;  3JRQ A;  2J4O A;  5F1M A;  4YZG A;  3FXK A;  3KB3 B;  2POM A;  3W43 A;  2XZV A;  4DS8 B;  2JFS A; 
#chains in the Genus database with same CATH homology
 2PNQ A;  3KE6 A;  4JND A;  2POP A;  3PU9 A;  4OIC B;  2P8E A;  3UJK A;  3MQ3 A;  3NMT B;  3RT0 A;  4RAG A;  4RA2 A;  3F79 A;  3W40 A;  3RNR A;  4LGA B;  3EQ2 A;  4YZH A;  3NMV B;  4N0G A;  4LA7 B;  3W45 A;  5ITI A;  2I44 A;  2PK0 A;  3UJL B;  3KDJ B;  3FXJ A;  3ZVU B;  1TXO A;  4DA1 A;  3UJG B;  3D8K A;  3N3C A;  3FXL A;  2Y09 A;  3T91 A;  3T9Q A;  4LGB B;  2ISN A;  5D2U A;  3W42 A;  3ZT9 A;  2J82 A;  3FXM A;  4WVO B;  2J86 A;  4LG5 B;  3FXO A;  1A6Q A;  3QN1 B;  3W44 A;  3ES2 A;  2JFT A;  2IRM A;  5JO1 B;  2JFR A;  5JO2 B;  3NMN B;  2I0O A;  2CM1 A;  2IQ1 A;  4RAF A;  2V06 A;  3W41 A;  3JRQ A;  2J4O A;  5F1M A;  4YZG A;  3FXK A;  3KB3 B;  2POM A;  3W43 A;  2XZV A;  4DS8 B;  2JFS A; 
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similar chains in the Genus database (?% sequence similarity)
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