2JFRA

Crystal structure of the ppm ser-thr phosphatase mspp from mycobacterium smegmatis in complex with phosphate at 0.83 a resolution
Total Genus 76

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
234
structure length
234
Chain Sequence
GMASVLSAATATDQGPVRENNQDACLADGILYAVADGFGARGHHASATALKTLSAGFAAAPDRDGLLEAVQQANLRVFELLGDEPTVSGTTLTAVAVFEPGQGGPLVVNIGDSPLYRIRDGHMEQLTDDHSVAGELVRMGEITRHEARWHPQRHLLTRALGIGPHIGPDVFGIDCGPGDRLLISSDGLFAAADEALIVDAATSPDPQVAVRRLVEVANDAGGSDNTTVVVIDLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (99-101)S1 (4-12)S10 (225-232)TIV1 (14-17)EMPTYTVIII4 (221-224)S2 (22-27)TIV2 (37-40)3H2 (185-188)S3 (30-37)TII'1 (27-30)AH1 (40-58)S4 (88-95)TVIII2 (83-86)AH2 (62-81)O1 (59-61)TII1 (158-161)S5 (105-109)S6 (114-118)S7 (121-124)TIV3 (117-120)S9 (178-183)S8 (168-171)AH3 (131-138)AH4 (143-147)TIV5 (188-191)TI1 (149-152)TI2 (151-154)TIV4 (155-158)TII2 (175-178)AH5 (193-201)AH6 (205-219)TVIII3 (202-205)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Mycobacterium smegmatis
publication title Insights Into the Mechanism of Ppm Ser/Thr Phosphatases from the Atomic Resolution Structures of a Mycobacterial Enzyme
pubmed doi rcsb
molecule keywords SER-THR PHOSPHATASE MSPP
total genus 76
structure length 234
sequence length 234
ec nomenclature
pdb deposition date 2007-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13672 PP2C_2 Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 2jfrA00
1A6QA 2J82A 2J86A 4YZHA 3NMVB 4OICB 3MQ3A 4LGBB 4RA2A 4YZGA 3FXKA 4DS8B 2POPA 3ZT9A 4LGAB 3N3CA 5D2UA 3UJLB 3NMNB 3RT0A 4RAFA 2JFTA 3F79A 3FXOA 3W40A 3ES2A 4LG5B 3UJGB 2P8EA 3FXJA 1TXOA 2JFRA 2XZVA 3ZVUB 2JFSA 2ISNA 2IRMA 2J4OA 5JO1B 2V06A 2PNQA 3QN1B 5JO2B 2IQ1A 3FXLA 4LA7B 3W45A 3W41A 3T9QA 2I0OA 3JRQA 3W43A 3D8KA 3RNRA 3PU9A 3T91A 4RAGA 4N0GA 3KE6A 3KDJB 2Y09A 2PK0A 4JNDA 5F1MA 5ITIA 3NMTB 3UJKA 3W42A 3W44A 3KB3B 4WVOB 2CM1A 3EQ2A 2POMA 3FXMA 2I44A 4DA1A
chains in the Genus database with same CATH superfamily
1A6QA 2J82A 2J86A 4YZHA 3NMVB 4OICB 3MQ3A 4LGBB 4RA2A 4YZGA 3FXKA 4DS8B 2POPA 3ZT9A 4LGAB 3N3CA 5D2UA 3UJLB 3NMNB 3RT0A 4RAFA 2JFTA 3F79A 3FXOA 3W40A 3ES2A 4LG5B 3UJGB 2P8EA 3FXJA 1TXOA 2JFRA 2XZVA 3ZVUB 2JFSA 2ISNA 2IRMA 2J4OA 5JO1B 2V06A 2PNQA 3QN1B 5JO2B 2IQ1A 3FXLA 4LA7B 3W45A 3W41A 3T9QA 2I0OA 3JRQA 3W43A 3D8KA 3RNRA 3PU9A 3T91A 4RAGA 4N0GA 3KE6A 3KDJB 2Y09A 4IIKA 2PK0A 4IIPA 4JNDA 5F1MA 5ITIA 3NMTB 3UJKA 3W42A 3W44A 3KB3B 4WVOB 2CM1A 3EQ2A 2POMA 3FXMA 2I44A 4DA1A
chains in the Genus database with same CATH topology
1A6QA 2J82A 2J86A 4YZHA 3NMVB 4OICB 3MQ3A 4LGBB 4RA2A 4YZGA 3FXKA 4DS8B 2POPA 3ZT9A 4LGAB 3N3CA 5D2UA 3UJLB 3NMNB 3RT0A 4RAFA 2JFTA 3F79A 3FXOA 3W40A 3ES2A 4LG5B 3UJGB 2P8EA 3FXJA 1TXOA 2JFRA 2XZVA 3ZVUB 2JFSA 2ISNA 2IRMA 2J4OA 5JO1B 2V06A 2PNQA 3QN1B 5JO2B 2IQ1A 3FXLA 4LA7B 3W45A 3W41A 3T9QA 2I0OA 3JRQA 3W43A 3D8KA 3RNRA 3PU9A 3T91A 4RAGA 4N0GA 3KE6A 3KDJB 2Y09A 2PK0A 4JNDA 5F1MA 5ITIA 3NMTB 3UJKA 3W42A 3W44A 3KB3B 4WVOB 2CM1A 3EQ2A 2POMA 3FXMA 2I44A 4DA1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A6Q A;  2J82 A;  2J86 A;  4YZH A;  3NMV B;  4OIC B;  3MQ3 A;  4LGB B;  4RA2 A;  4YZG A;  3FXK A;  4DS8 B;  2POP A;  3ZT9 A;  4LGA B;  3N3C A;  5D2U A;  3UJL B;  3NMN B;  3RT0 A;  4RAF A;  2JFT A;  3F79 A;  3FXO A;  3W40 A;  3ES2 A;  4LG5 B;  3UJG B;  2P8E A;  3FXJ A;  1TXO A;  2JFR A;  2XZV A;  3ZVU B;  2JFS A;  2ISN A;  2IRM A;  2J4O A;  5JO1 B;  2V06 A;  2PNQ A;  3QN1 B;  5JO2 B;  2IQ1 A;  3FXL A;  4LA7 B;  3W45 A;  3W41 A;  3T9Q A;  2I0O A;  3JRQ A;  3W43 A;  3D8K A;  3RNR A;  3PU9 A;  3T91 A;  4RAG A;  4N0G A;  3KE6 A;  3KDJ B;  2Y09 A;  2PK0 A;  4JND A;  5F1M A;  5ITI A;  3NMT B;  3UJK A;  3W42 A;  3W44 A;  3KB3 B;  4WVO B;  2CM1 A;  3EQ2 A;  2POM A;  3FXM A;  2I44 A;  4DA1 A; 
#chains in the Genus database with same CATH topology
 1A6Q A;  2J82 A;  2J86 A;  4YZH A;  3NMV B;  4OIC B;  3MQ3 A;  4LGB B;  4RA2 A;  4YZG A;  3FXK A;  4DS8 B;  2POP A;  3ZT9 A;  4LGA B;  3N3C A;  5D2U A;  3UJL B;  3NMN B;  3RT0 A;  4RAF A;  2JFT A;  3F79 A;  3FXO A;  3W40 A;  3ES2 A;  4LG5 B;  3UJG B;  2P8E A;  3FXJ A;  1TXO A;  2JFR A;  2XZV A;  3ZVU B;  2JFS A;  2ISN A;  2IRM A;  2J4O A;  5JO1 B;  2V06 A;  2PNQ A;  3QN1 B;  5JO2 B;  2IQ1 A;  3FXL A;  4LA7 B;  3W45 A;  3W41 A;  3T9Q A;  2I0O A;  3JRQ A;  3W43 A;  3D8K A;  3RNR A;  3PU9 A;  3T91 A;  4RAG A;  4N0G A;  3KE6 A;  3KDJ B;  2Y09 A;  4IIK A;  2PK0 A;  4IIP A;  4JND A;  5F1M A;  5ITI A;  3NMT B;  3UJK A;  3W42 A;  3W44 A;  3KB3 B;  4WVO B;  2CM1 A;  3EQ2 A;  2POM A;  3FXM A;  2I44 A;  4DA1 A; 
#chains in the Genus database with same CATH homology
 1A6Q A;  2J82 A;  2J86 A;  4YZH A;  3NMV B;  4OIC B;  3MQ3 A;  4LGB B;  4RA2 A;  4YZG A;  3FXK A;  4DS8 B;  2POP A;  3ZT9 A;  4LGA B;  3N3C A;  5D2U A;  3UJL B;  3NMN B;  3RT0 A;  4RAF A;  2JFT A;  3F79 A;  3FXO A;  3W40 A;  3ES2 A;  4LG5 B;  3UJG B;  2P8E A;  3FXJ A;  1TXO A;  2JFR A;  2XZV A;  3ZVU B;  2JFS A;  2ISN A;  2IRM A;  2J4O A;  5JO1 B;  2V06 A;  2PNQ A;  3QN1 B;  5JO2 B;  2IQ1 A;  3FXL A;  4LA7 B;  3W45 A;  3W41 A;  3T9Q A;  2I0O A;  3JRQ A;  3W43 A;  3D8K A;  3RNR A;  3PU9 A;  3T91 A;  4RAG A;  4N0G A;  3KE6 A;  3KDJ B;  2Y09 A;  2PK0 A;  4JND A;  5F1M A;  5ITI A;  3NMT B;  3UJK A;  3W42 A;  3W44 A;  3KB3 B;  4WVO B;  2CM1 A;  3EQ2 A;  2POM A;  3FXM A;  2I44 A;  4DA1 A; 
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