2KBXB

Solution structure of ilk-pinch complex
Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
70
structure length
70
Chain Sequence
MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (8-9)S2 (16-17)O1 (10-35)TIV1 (10-13)TIV2 (11-14)S4 (29-32)TI1 (32-35)TI2 (33-36)EMPTYTII1 (45-48)S6 (56-58)TI3 (38-41)TI'2 (53-56)TIV3 (18-21)AH1 (60-67)S5 (51-53)S3 (23-26)Updating...
connected with : NaN
molecule tags Cell adhesion
source organism Homo sapiens
publication title Cytosketal proteins
rcsb
molecule keywords Integrin-linked protein kinase
total genus 10
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2008-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2kbxB00
1CXXA 3MMKA 1WYHA 2IYBE 1A7IA 1X6AA 2KBXB 2D8XA 2MBVA 1X4LA 2CUPA 2O10A 4HI9B 1U5SB 1IBIA 2EHEA 2CO8A 1V6GA 1NYPA 2DJ7A 4JCJA 2CURA 2XJZA 1G47A 2L6YB 1X68A 2EGQA 2YPAC 2XJYA 2DFYC 2DLOA 3F6QB 1X64A 1WIGA 2DARA 1X61A 2D8ZA 2XQNT 1IMLA 1J2OA 1RUTX 1X63A 4KFZA 1X62A 2L6ZC 1B8TA 1CTLA 2D8YA 1QLIA 3IXEB 4HI8B 1X3HA 2CORA 2LXDA 2L4ZA 1M3VA 2CU8A 2JTNA 2LZUA 2CUQA 2MIUA 2O13A
chains in the Genus database with same CATH superfamily
1CXXA 1X4LA 2CUPA 4UF0B 2CO8A 5FXWA 2XJZA 1X68A 1X64A 1X61A 2D8ZA 1RUTX 5LKZA 4KFZA 5FXXA 4BHWA 5LKXA 4EZHA 3AVRA 1X3HA 5FXZA 1M3VA 3ZLIA 2CU8A 5LKUA 1A7IA 4HI9B 2MBVA 2EHEA 1V6GA 2CURA 1G47A 2XJYA 2DARA 5FY0A 1IMLA 3NIKA 1X62A 5FY7A 1B8TA 2D8YA 5FYMA 2L4ZA 3AVSA 3NISA 3NIMA 3MMKA 1WYHA 2O10A 1IBIA 3NILA 5FY1A 2DJ7A 4EZ4A 4JCJA 3ZPOA 4ASKA 5LKTA 2EGQA 4UF0A 2YPAC 2DLOA 2L6ZC 1CTLA 4HI8B 2CORA 4EYUA 2LZUA 2CUQA 2MIUA 5A1LA 5FXVA 3NINA 2IYBE 1X6AA 2KBXB 2D8XA 1U5SB 1NYPA 3NIHA 2L6YB 2DFYC 5FP3A 3F6QB 1WIGA 2XQNT 2XUEA 1J2OA 1X63A 3NIJA 1QLIA 3IXEB 2LXDA 2JTNA 2O13A
chains in the Genus database with same CATH topology
1CXXA 1X4LA 2CUPA 4UF0B 2CO8A 5FXWA 2XJZA 1X68A 1X64A 1X61A 2D8ZA 1RUTX 5LKZA 4KFZA 5FXXA 4BHWA 5LKXA 4EZHA 3AVRA 1X3HA 5FXZA 1M3VA 3ZLIA 2CU8A 5LKUA 1A7IA 4HI9B 2MBVA 2EHEA 1V6GA 2CURA 1G47A 2XJYA 2DARA 5FY0A 1IMLA 3NIKA 1X62A 5FY7A 1B8TA 2D8YA 5FYMA 2L4ZA 3AVSA 3NISA 3NIMA 3MMKA 1WYHA 2O10A 1IBIA 3NILA 5FY1A 2DJ7A 4EZ4A 4JCJA 3ZPOA 4ASKA 5LKTA 2EGQA 4UF0A 2YPAC 2DLOA 2L6ZC 1CTLA 4HI8B 2CORA 4EYUA 2LZUA 2CUQA 2MIUA 5A1LA 5FXVA 3NINA 2IYBE 1X6AA 2KBXB 2D8XA 1U5SB 1NYPA 3NIHA 2L6YB 2DFYC 5FP3A 3F6QB 1WIGA 2XQNT 2XUEA 1J2OA 1X63A 3NIJA 1QLIA 3IXEB 2LXDA 2JTNA 2O13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CXX A;  3MMK A;  1WYH A;  2IYB E;  1A7I A;  1X6A A;  2KBX B;  2D8X A;  2MBV A;  1X4L A;  2CUP A;  2O10 A;  4HI9 B;  1U5S B;  1IBI A;  2EHE A;  2CO8 A;  1V6G A;  1NYP A;  2DJ7 A;  4JCJ A;  2CUR A;  2XJZ A;  1G47 A;  2L6Y B;  1X68 A;  2EGQ A;  2YPA C;  2XJY A;  2DFY C;  2DLO A;  3F6Q B;  1X64 A;  1WIG A;  2DAR A;  1X61 A;  2D8Z A;  2XQN T;  1IML A;  1J2O A;  1RUT X;  1X63 A;  4KFZ A;  1X62 A;  2L6Z C;  1B8T A;  1CTL A;  2D8Y A;  1QLI A;  3IXE B;  4HI8 B;  1X3H A;  2COR A;  2LXD A;  2L4Z A;  1M3V A;  2CU8 A;  2JTN A;  2LZU A;  2CUQ A;  2MIU A;  2O13 A; 
#chains in the Genus database with same CATH topology
 1CXX A;  1X4L A;  2CUP A;  4UF0 B;  2CO8 A;  5FXW A;  2XJZ A;  1X68 A;  1X64 A;  1X61 A;  2D8Z A;  1RUT X;  5LKZ A;  4KFZ A;  5FXX A;  4BHW A;  5LKX A;  4EZH A;  3AVR A;  1X3H A;  5FXZ A;  1M3V A;  3ZLI A;  2CU8 A;  5LKU A;  1A7I A;  4HI9 B;  2MBV A;  2EHE A;  1V6G A;  2CUR A;  1G47 A;  2XJY A;  2DAR A;  5FY0 A;  1IML A;  3NIK A;  1X62 A;  5FY7 A;  1B8T A;  2D8Y A;  5FYM A;  2L4Z A;  3AVS A;  3NIS A;  3NIM A;  3MMK A;  1WYH A;  2O10 A;  1IBI A;  3NIL A;  5FY1 A;  2DJ7 A;  4EZ4 A;  4JCJ A;  3ZPO A;  4ASK A;  5LKT A;  2EGQ A;  4UF0 A;  2YPA C;  2DLO A;  2L6Z C;  1CTL A;  4HI8 B;  2COR A;  4EYU A;  2LZU A;  2CUQ A;  2MIU A;  5A1L A;  5FXV A;  3NIN A;  2IYB E;  1X6A A;  2KBX B;  2D8X A;  1U5S B;  1NYP A;  3NIH A;  2L6Y B;  2DFY C;  5FP3 A;  3F6Q B;  1WIG A;  2XQN T;  2XUE A;  1J2O A;  1X63 A;  3NIJ A;  1QLI A;  3IXE B;  2LXD A;  2JTN A;  2O13 A; 
#chains in the Genus database with same CATH homology
 1CXX A;  1X4L A;  2CUP A;  4UF0 B;  2CO8 A;  5FXW A;  2XJZ A;  1X68 A;  1X64 A;  1X61 A;  2D8Z A;  1RUT X;  5LKZ A;  4KFZ A;  5FXX A;  4BHW A;  5LKX A;  4EZH A;  3AVR A;  1X3H A;  5FXZ A;  1M3V A;  3ZLI A;  2CU8 A;  5LKU A;  1A7I A;  4HI9 B;  2MBV A;  2EHE A;  1V6G A;  2CUR A;  1G47 A;  2XJY A;  2DAR A;  5FY0 A;  1IML A;  3NIK A;  1X62 A;  5FY7 A;  1B8T A;  2D8Y A;  5FYM A;  2L4Z A;  3AVS A;  3NIS A;  3NIM A;  3MMK A;  1WYH A;  2O10 A;  1IBI A;  3NIL A;  5FY1 A;  2DJ7 A;  4EZ4 A;  4JCJ A;  3ZPO A;  4ASK A;  5LKT A;  2EGQ A;  4UF0 A;  2YPA C;  2DLO A;  2L6Z C;  1CTL A;  4HI8 B;  2COR A;  4EYU A;  2LZU A;  2CUQ A;  2MIU A;  5A1L A;  5FXV A;  3NIN A;  2IYB E;  1X6A A;  2KBX B;  2D8X A;  1U5S B;  1NYP A;  3NIH A;  2L6Y B;  2DFY C;  5FP3 A;  3F6Q B;  1WIG A;  2XQN T;  2XUE A;  1J2O A;  1X63 A;  3NIJ A;  1QLI A;  3IXE B;  2LXD A;  2JTN A;  2O13 A; 
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