2KC5 | Genus

Total Genus 29

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	162
structure length	162
Chain Sequence	MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__891763086980518__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__891763086980518__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/2KC5/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__891763086980518__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"891763086980518","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/2KC5/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__891763086980518__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Solution structure of the Escherichia coli HybE reveals a novel fold pubmed doi rcsb
molecule keywords	Hydrogenase-2 operon protein hybE
molecule tags	Chaperone
source organism	Escherichia coli
total genus	29
structure length	162
sequence length	162
ec nomenclature
pdb deposition date	2008-12-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF11939	NiFe-hyd_HybE	[NiFe]-hydrogenase assembly, chaperone, HybE

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.40	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	2kc5A01

2KC5A
chains in the Genus database with same CATH superfamily

2P9ID 2P9KF 1K8KD 3RSED 3UKUD 2BSJA 3DXKD 3DXMF 4G6TA 2BSIA 2P9PD 3DWLF 3UKRF 1JYAA 2P9SF 2BSHA 4XEID 2KC5A 2FM8A 1TYQF 2PLGA 1RY9A 3ULEF 4H5BA 2P9KD 2MQDA 3VX7B 1TTWA 3DXMD 1XKPC 2LPUA 3UKRD 1K6ZA 3DWLD 1K3SA 1U2VF 2P9SD 4GF3A 4JD2F 1TYQD 1JYOA 2P9NF 2BHOA 4JMFB 3ULED 4EBRA 4GSLC 3VX8B 4AKXA 2P9LF 1S28A 1K3EA 2P9UF 2DYTA 1L2WA 2P9IF 1K8KF 1U2VD 2P9ND 3EPUA 4JD2D 3DXKF 3RSEF 3KXYA 3UKUF 3TU3A 2P9PF 2OD0A 1N5BA 2P9LD 2XGAA 3CXJA 2P9UD 4XEIF 1XKPB
chains in the Genus database with same CATH topology

2P9ID 2P9KF 1K8KD 3RSED 3UKUD 2BSJA 3DXKD 3DXMF 4G6TA 2BSIA 2P9PD 3DWLF 3UKRF 1JYAA 2P9SF 2BSHA 4XEID 2KC5A 2FM8A 1TYQF 2PLGA 1RY9A 3ULEF 4H5BA 2P9KD 2MQDA 3VX7B 1TTWA 3DXMD 1XKPC 2LPUA 3UKRD 1K6ZA 3DWLD 1K3SA 1U2VF 2P9SD 4GF3A 4JD2F 1TYQD 1JYOA 2P9NF 2BHOA 4JMFB 3ULED 4EBRA 4GSLC 3VX8B 4AKXA 2P9LF 1S28A 1K3EA 2P9UF 2DYTA 1L2WA 2P9IF 1K8KF 1U2VD 2P9ND 3EPUA 4JD2D 3DXKF 3RSEF 3KXYA 3UKUF 3TU3A 2P9PF 1N5BA 2P9LD 2XGAA 3CXJA 2P9UD 4XEIF 1XKPB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2KC5 A; 
#chains in the Genus database with same CATH topology
 2P9I D;  2P9K F;  1K8K D;  3RSE D;  3UKU D;  2BSJ A;  3DXK D;  3DXM F;  4G6T A;  2BSI A;  2P9P D;  3DWL F;  3UKR F;  1JYA A;  2P9S F;  2BSH A;  4XEI D;  2KC5 A;  2FM8 A;  1TYQ F;  2PLG A;  1RY9 A;  3ULE F;  4H5B A;  2P9K D;  2MQD A;  3VX7 B;  1TTW A;  3DXM D;  1XKP C;  2LPU A;  3UKR D;  1K6Z A;  3DWL D;  1K3S A;  1U2V F;  2P9S D;  4GF3 A;  4JD2 F;  1TYQ D;  1JYO A;  2P9N F;  2BHO A;  4JMF B;  3ULE D;  4EBR A;  4GSL C;  3VX8 B;  4AKX A;  2P9L F;  1S28 A;  1K3E A;  2P9U F;  2DYT A;  1L2W A;  2P9I F;  1K8K F;  1U2V D;  2P9N D;  3EPU A;  4JD2 D;  3DXK F;  3RSE F;  3KXY A;  3UKU F;  3TU3 A;  2P9P F;  2OD0 A;  1N5B A;  2P9L D;  2XGA A;  3CXJ A;  2P9U D;  4XEI F;  1XKP B; 
#chains in the Genus database with same CATH homology
 2P9I D;  2P9K F;  1K8K D;  3RSE D;  3UKU D;  2BSJ A;  3DXK D;  3DXM F;  4G6T A;  2BSI A;  2P9P D;  3DWL F;  3UKR F;  1JYA A;  2P9S F;  2BSH A;  4XEI D;  2KC5 A;  2FM8 A;  1TYQ F;  2PLG A;  1RY9 A;  3ULE F;  4H5B A;  2P9K D;  2MQD A;  3VX7 B;  1TTW A;  3DXM D;  1XKP C;  2LPU A;  3UKR D;  1K6Z A;  3DWL D;  1K3S A;  1U2V F;  2P9S D;  4GF3 A;  4JD2 F;  1TYQ D;  1JYO A;  2P9N F;  2BHO A;  4JMF B;  3ULE D;  4EBR A;  4GSL C;  3VX8 B;  4AKX A;  2P9L F;  1S28 A;  1K3E A;  2P9U F;  2DYT A;  1L2W A;  2P9I F;  1K8K F;  1U2V D;  2P9N D;  3EPU A;  4JD2 D;  3DXK F;  3RSE F;  3KXY A;  3UKU F;  3TU3 A;  2P9P F;  1N5B A;  2P9L D;  2XGA A;  3CXJ A;  2P9U D;  4XEI F;  1XKP B;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2KC5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations