2L4ZA

Nmr structure of fusion of ctip (641-685) to lmo4-lim1 (18-82)
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
121
structure length
121
Chain Sequence
SLQNNQDVSFENIQWSIDPGADLSQYKMDVTVIDTKDGSQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S2 (21-22)TIV10 (23-26)TI4 (24-27)EMPTYS3 (29-30)AH1 (74-81)TVIII2 (32-35)S4 (35-38)S7 (71-72)TIV11 (37-40)S5 (41-44)TI5 (44-47)TI6 (45-48)TIV13 (46-49)TI7 (50-53)TIV14 (51-54)3H3 (57-59)TIV15 (66-69)TIV9 (19-22)S6 (65-66)Updating...
connected with : NaN
publication title Structural Basis of the Interaction of the Breast Cancer Oncogene LMO4 with the Tumour Suppressor CtIP/RBBP8.
pubmed doi rcsb
molecule keywords DNA endonuclease RBBP8, LIM domain transcription factor LMO4
molecule tags Hydrolase, metal binding protein
source organism Homo sapiens, undefined
total genus 19
structure length 121
sequence length 121
ec nomenclature
pdb deposition date 2010-10-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2l4zA01
1CXXA 2CUPA 2DFYC 1X61A 2CU8A 3MMKA 1WIGA 2LZUA 2O13A 2MBVA 1X62A 2L6ZC 1RUTX 1X63A 1QLIA 2DARA 2YPAC 1NYPA 2L4ZA 2O10A 1IMLA 2CUQA 2L6YB 3F6QB 1X64A 2D8ZA 2D8YA 2EHEA 2DLOA 1U5SB 1CTLA 4KFZA 1J2OA 2XJZA 1M3VA 2XJYA 1A7IA 4JCJA 2MIUA 1X4LA 2CORA 2D8XA 2KBXB 4HI9B 1X68A 1WYHA 2DJ7A 2LXDA 2XQNT 1X6AA 1G47A 2JTNA 1B8TA 2CO8A 2EGQA 2IYBE 1X3HA 4HI8B 3IXEB 1IBIA 2CURA 1V6GA
chains in the Genus database with same CATH superfamily
5A1LA 2CU8A 1WIGA 3ZPOA 5FXXA 5LKXA 5FY1A 2CUQA 2DLOA 4KFZA 5FXVA 2XJZA 2CORA 1X68A 2DJ7A 2XQNT 5LKTA 2JTNA 1B8TA 4HI8B 5FY0A 2CUPA 1CXXA 2LZUA 3NIKA 2MBVA 3NIHA 2L6ZC 1RUTX 1X63A 1QLIA 3NIJA 2O10A 1IMLA 1X64A 2D8YA 1CTLA 5FXWA 1M3VA 4UF0A 2XJYA 1A7IA 1X4LA 4ASKA 2D8XA 3NIMA 1WYHA 3NINA 4EZHA 1G47A 5FYMA 2IYBE 1IBIA 4UF0B 3F6QB 2DFYC 3MMKA 5FP3A 3AVRA 2DARA 5LKZA 2YPAC 1NYPA 2L6YB 2D8ZA 1U5SB 4BHWA 2KBXB 2XUEA 3AVSA 2CO8A 2EGQA 3IXEB 1V6GA 1X61A 5FXZA 4EZ4A 2O13A 1X62A 5FY7A 4EYUA 2L4ZA 3NILA 5LKUA 2EHEA 1J2OA 4JCJA 3ZLIA 2MIUA 4HI9B 3NISA 2LXDA 1X6AA 1X3HA 2CURA
chains in the Genus database with same CATH topology
5A1LA 2CU8A 1WIGA 3ZPOA 5FXXA 5LKXA 5FY1A 2CUQA 2DLOA 4KFZA 5FXVA 2XJZA 2CORA 1X68A 2DJ7A 2XQNT 5LKTA 2JTNA 1B8TA 4HI8B 5FY0A 2CUPA 1CXXA 2LZUA 3NIKA 2MBVA 3NIHA 2L6ZC 1RUTX 1X63A 1QLIA 3NIJA 2O10A 1IMLA 1X64A 2D8YA 1CTLA 5FXWA 1M3VA 4UF0A 2XJYA 1A7IA 1X4LA 4ASKA 2D8XA 3NIMA 1WYHA 3NINA 4EZHA 1G47A 5FYMA 2IYBE 1IBIA 4UF0B 3F6QB 2DFYC 3MMKA 5FP3A 3AVRA 2DARA 5LKZA 2YPAC 1NYPA 2L6YB 2D8ZA 1U5SB 4BHWA 2KBXB 2XUEA 3AVSA 2CO8A 2EGQA 3IXEB 1V6GA 1X61A 5FXZA 4EZ4A 2O13A 1X62A 5FY7A 4EYUA 2L4ZA 3NILA 5LKUA 2EHEA 1J2OA 4JCJA 3ZLIA 2MIUA 4HI9B 3NISA 2LXDA 1X6AA 1X3HA 2CURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CXX A;  2CUP A;  2DFY C;  1X61 A;  2CU8 A;  3MMK A;  1WIG A;  2LZU A;  2O13 A;  2MBV A;  1X62 A;  2L6Z C;  1RUT X;  1X63 A;  1QLI A;  2DAR A;  2YPA C;  1NYP A;  2L4Z A;  2O10 A;  1IML A;  2CUQ A;  2L6Y B;  3F6Q B;  1X64 A;  2D8Z A;  2D8Y A;  2EHE A;  2DLO A;  1U5S B;  1CTL A;  4KFZ A;  1J2O A;  2XJZ A;  1M3V A;  2XJY A;  1A7I A;  4JCJ A;  2MIU A;  1X4L A;  2COR A;  2D8X A;  2KBX B;  4HI9 B;  1X68 A;  1WYH A;  2DJ7 A;  2LXD A;  2XQN T;  1X6A A;  1G47 A;  2JTN A;  1B8T A;  2CO8 A;  2EGQ A;  2IYB E;  1X3H A;  4HI8 B;  3IXE B;  1IBI A;  2CUR A;  1V6G A; 
#chains in the Genus database with same CATH topology
 5A1L A;  2CU8 A;  1WIG A;  3ZPO A;  5FXX A;  5LKX A;  5FY1 A;  2CUQ A;  2DLO A;  4KFZ A;  5FXV A;  2XJZ A;  2COR A;  1X68 A;  2DJ7 A;  2XQN T;  5LKT A;  2JTN A;  1B8T A;  4HI8 B;  5FY0 A;  2CUP A;  1CXX A;  2LZU A;  3NIK A;  2MBV A;  3NIH A;  2L6Z C;  1RUT X;  1X63 A;  1QLI A;  3NIJ A;  2O10 A;  1IML A;  1X64 A;  2D8Y A;  1CTL A;  5FXW A;  1M3V A;  4UF0 A;  2XJY A;  1A7I A;  1X4L A;  4ASK A;  2D8X A;  3NIM A;  1WYH A;  3NIN A;  4EZH A;  1G47 A;  5FYM A;  2IYB E;  1IBI A;  4UF0 B;  3F6Q B;  2DFY C;  3MMK A;  5FP3 A;  3AVR A;  2DAR A;  5LKZ A;  2YPA C;  1NYP A;  2L6Y B;  2D8Z A;  1U5S B;  4BHW A;  2KBX B;  2XUE A;  3AVS A;  2CO8 A;  2EGQ A;  3IXE B;  1V6G A;  1X61 A;  5FXZ A;  4EZ4 A;  2O13 A;  1X62 A;  5FY7 A;  4EYU A;  2L4Z A;  3NIL A;  5LKU A;  2EHE A;  1J2O A;  4JCJ A;  3ZLI A;  2MIU A;  4HI9 B;  3NIS A;  2LXD A;  1X6A A;  1X3H A;  2CUR A; 
#chains in the Genus database with same CATH homology
 5A1L A;  2CU8 A;  1WIG A;  3ZPO A;  5FXX A;  5LKX A;  5FY1 A;  2CUQ A;  2DLO A;  4KFZ A;  5FXV A;  2XJZ A;  2COR A;  1X68 A;  2DJ7 A;  2XQN T;  5LKT A;  2JTN A;  1B8T A;  4HI8 B;  5FY0 A;  2CUP A;  1CXX A;  2LZU A;  3NIK A;  2MBV A;  3NIH A;  2L6Z C;  1RUT X;  1X63 A;  1QLI A;  3NIJ A;  2O10 A;  1IML A;  1X64 A;  2D8Y A;  1CTL A;  5FXW A;  1M3V A;  4UF0 A;  2XJY A;  1A7I A;  1X4L A;  4ASK A;  2D8X A;  3NIM A;  1WYH A;  3NIN A;  4EZH A;  1G47 A;  5FYM A;  2IYB E;  1IBI A;  4UF0 B;  3F6Q B;  2DFY C;  3MMK A;  5FP3 A;  3AVR A;  2DAR A;  5LKZ A;  2YPA C;  1NYP A;  2L6Y B;  2D8Z A;  1U5S B;  4BHW A;  2KBX B;  2XUE A;  3AVS A;  2CO8 A;  2EGQ A;  3IXE B;  1V6G A;  1X61 A;  5FXZ A;  4EZ4 A;  2O13 A;  1X62 A;  5FY7 A;  4EYU A;  2L4Z A;  3NIL A;  5LKU A;  2EHE A;  1J2O A;  4JCJ A;  3ZLI A;  2MIU A;  4HI9 B;  3NIS A;  2LXD A;  1X6A A;  1X3H A;  2CUR A; 
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