2LPU | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	148
structure length	148
Chain Sequence	SMLTLPEYNEQIPNVRSLLTKWAKVERIQDVQDGLQLDVRLKTDTLLELHIYYDHVYHVPSIKFRLWSLDTEEDISSLRLLTLSDSELRSILNLGTFSVTLSTDMEMKSVYYYINNCDTDANVGSDVEHYLTRWISLYIRIFDLNFVP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 148 atoms

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148 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate pubmed doi rcsb
molecule keywords	KmAtg10
molecule tags	Protein transport
source organism	Kluyveromyces marxianus
total genus	21
structure length	148
sequence length	148
ec nomenclature
pdb deposition date	2012-02-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03987	Autophagy_act_C	Autophagocytosis associated protein, active-site domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.50	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	2lpuA00

2DYTA 3VX7B 4GSLC 2LPUA 3VX8B 4EBRA
chains in the Genus database with same CATH superfamily

2P9PF 1L2WA 1TYQD 3RSED 3VX7B 4GSLC 2BHOA 1RY9A 3DXMF 1XKPC 3DXKF 3EPUA 4XEIF 2P9UD 2P9KF 3DWLF 3VX8B 3ULED 1S28A 1JYOA 4EBRA 3UKRF 1U2VF 4JD2F 1K6ZA 2P9SD 3TU3A 2XGAA 1N5BA 2BSIA 1K8KF 2LPUA 2P9ID 2P9PD 3UKUF 2P9IF 1K3SA 3DXMD 3DXKD 4XEID 2OD0A 2P9KD 2DYTA 3DWLD 4G6TA 4GF3A 4AKXA 2BSJA 3UKRD 1U2VD 4JD2D 1TYQF 2P9NF 2P9LF 1TTWA 2PLGA 3RSEF 3UKUD 1K8KD 4JMFB 2P9UF 3CXJA 1K3EA 1JYAA 2MQDA 3ULEF 2FM8A 1XKPB 2KC5A 3KXYA 2BSHA 2P9SF 4H5BA 2P9ND 2P9LD
chains in the Genus database with same CATH topology

2P9PF 1L2WA 1TYQD 3RSED 3VX7B 4GSLC 2BHOA 1RY9A 3DXMF 1XKPC 3DXKF 3EPUA 4XEIF 2P9UD 2P9KF 3DWLF 3VX8B 3ULED 1S28A 1JYOA 4EBRA 3UKRF 1U2VF 4JD2F 1K6ZA 2P9SD 3TU3A 2XGAA 1N5BA 2BSIA 1K8KF 2LPUA 2P9ID 2P9PD 3UKUF 2P9IF 1K3SA 3DXMD 3DXKD 4XEID 2P9KD 3DWLD 2DYTA 4G6TA 4GF3A 4AKXA 2BSJA 3UKRD 1U2VD 4JD2D 1TYQF 2P9NF 2P9LF 1TTWA 2PLGA 3RSEF 3UKUD 1K8KD 4JMFB 2P9UF 3CXJA 1K3EA 1JYAA 2MQDA 3ULEF 2FM8A 1XKPB 2KC5A 3KXYA 2BSHA 2P9SF 4H5BA 2P9ND 2P9LD
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2DYT A;  3VX7 B;  4GSL C;  2LPU A;  3VX8 B;  4EBR A; 
#chains in the Genus database with same CATH topology
 2P9P F;  1L2W A;  1TYQ D;  3RSE D;  3VX7 B;  4GSL C;  2BHO A;  1RY9 A;  3DXM F;  1XKP C;  3DXK F;  3EPU A;  4XEI F;  2P9U D;  2P9K F;  3DWL F;  3VX8 B;  3ULE D;  1S28 A;  1JYO A;  4EBR A;  3UKR F;  1U2V F;  4JD2 F;  1K6Z A;  2P9S D;  3TU3 A;  2XGA A;  1N5B A;  2BSI A;  1K8K F;  2LPU A;  2P9I D;  2P9P D;  3UKU F;  2P9I F;  1K3S A;  3DXM D;  3DXK D;  4XEI D;  2OD0 A;  2P9K D;  2DYT A;  3DWL D;  4G6T A;  4GF3 A;  4AKX A;  2BSJ A;  3UKR D;  1U2V D;  4JD2 D;  1TYQ F;  2P9N F;  2P9L F;  1TTW A;  2PLG A;  3RSE F;  3UKU D;  1K8K D;  4JMF B;  2P9U F;  3CXJ A;  1K3E A;  1JYA A;  2MQD A;  3ULE F;  2FM8 A;  1XKP B;  2KC5 A;  3KXY A;  2BSH A;  2P9S F;  4H5B A;  2P9N D;  2P9L D; 
#chains in the Genus database with same CATH homology
 2P9P F;  1L2W A;  1TYQ D;  3RSE D;  3VX7 B;  4GSL C;  2BHO A;  1RY9 A;  3DXM F;  1XKP C;  3DXK F;  3EPU A;  4XEI F;  2P9U D;  2P9K F;  3DWL F;  3VX8 B;  3ULE D;  1S28 A;  1JYO A;  4EBR A;  3UKR F;  1U2V F;  4JD2 F;  1K6Z A;  2P9S D;  3TU3 A;  2XGA A;  1N5B A;  2BSI A;  1K8K F;  2LPU A;  2P9I D;  2P9P D;  3UKU F;  2P9I F;  1K3S A;  3DXM D;  3DXK D;  4XEI D;  2P9K D;  3DWL D;  2DYT A;  4G6T A;  4GF3 A;  4AKX A;  2BSJ A;  3UKR D;  1U2V D;  4JD2 D;  1TYQ F;  2P9N F;  2P9L F;  1TTW A;  2PLG A;  3RSE F;  3UKU D;  1K8K D;  4JMF B;  2P9U F;  3CXJ A;  1K3E A;  1JYA A;  2MQD A;  3ULE F;  2FM8 A;  1XKP B;  2KC5 A;  3KXY A;  2BSH A;  2P9S F;  4H5B A;  2P9N D;  2P9L D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2LPUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations