2LXD | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	123
structure length	123
Chain Sequence	YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 123 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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123 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Solution structure of a tethered Lmo2(LIM2) /Ldb1(LID) complex pubmed doi rcsb
molecule keywords	Rhombotin-2, LINKER, LIM domain-binding protein 1
molecule tags	Transcription
source organism	Mus musculus, synthetic, mus musculus
total genus	9
structure length	123
sequence length	123
ec nomenclature
pdb deposition date	2012-08-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00412	LIM	LIM domain
A	PF17916	LID	LIM interaction domain (LID)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.110.10	Mainly Beta	Ribbon	Cysteine Rich Protein	Cysteine Rich Protein	2lxdA00

2CUQA 1IMLA 2O13A 1RUTX 1X61A 1V6GA 2L6ZC 2DARA 4HI9B 2D8XA 3IXEB 2CORA 2O10A 2XQNT 1M3VA 1U5SB 1WYHA 2D8ZA 4JCJA 1X68A 1J2OA 4HI8B 1X3HA 2DLOA 3MMKA 2YPAC 2L6YB 2DJ7A 2DFYC 2LXDA 1X62A 2KBXB 1X6AA 1QLIA 2CO8A 2LZUA 2CU8A 2XJZA 1G47A 2D8YA 2CURA 4KFZA 3F6QB 2IYBE 2L4ZA 1A7IA 2MIUA 2MBVA 2JTNA 1IBIA 2EHEA 1X64A 1CTLA 2XJYA 2CUPA 2EGQA 1B8TA 1X4LA 1WIGA 1CXXA 1NYPA 1X63A
chains in the Genus database with same CATH superfamily

3ZPOA 1V6GA 4UF0A 4EZ4A 4HI9B 3IXEB 2D8ZA 4JCJA 4HI8B 2XUEA 3NILA 2YPAC 2DJ7A 2XJZA 1G47A 5FXWA 2CURA 3F6QB 3NIHA 2L4ZA 4ASKA 2MBVA 2JTNA 1IBIA 2EHEA 5A1LA 1CTLA 1B8TA 2EGQA 5LKTA 3NIMA 1RUTX 5LKZA 2L6ZC 2DARA 3AVRA 2O10A 2XQNT 1WYHA 1J2OA 3MMKA 5FP3A 5FY0A 5LKUA 1A7IA 4UF0B 4EZHA 1X64A 3NISA 2XJYA 3NIKA 2CUPA 1WIGA 2CUQA 1IMLA 2O13A 2DLOA 3NIJA 4BHWA 5FXXA 5FYMA 1X6AA 5FXZA 1QLIA 2D8YA 5FXVA 1CXXA 1NYPA 1X63A 1X61A 5FY1A 5FY7A 2D8XA 2CORA 1M3VA 1U5SB 1X68A 1X3HA 3AVSA 2L6YB 2DFYC 2LXDA 1X62A 5LKXA 2KBXB 2CO8A 2LZUA 2CU8A 4KFZA 4EYUA 2IYBE 2MIUA 3NINA 1X4LA 3ZLIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2CUQ A;  1IML A;  2O13 A;  1RUT X;  1X61 A;  1V6G A;  2L6Z C;  2DAR A;  4HI9 B;  2D8X A;  3IXE B;  2COR A;  2O10 A;  2XQN T;  1M3V A;  1U5S B;  1WYH A;  2D8Z A;  4JCJ A;  1X68 A;  1J2O A;  4HI8 B;  1X3H A;  2DLO A;  3MMK A;  2YPA C;  2L6Y B;  2DJ7 A;  2DFY C;  2LXD A;  1X62 A;  2KBX B;  1X6A A;  1QLI A;  2CO8 A;  2LZU A;  2CU8 A;  2XJZ A;  1G47 A;  2D8Y A;  2CUR A;  4KFZ A;  3F6Q B;  2IYB E;  2L4Z A;  1A7I A;  2MIU A;  2MBV A;  2JTN A;  1IBI A;  2EHE A;  1X64 A;  1CTL A;  2XJY A;  2CUP A;  2EGQ A;  1B8T A;  1X4L A;  1WIG A;  1CXX A;  1NYP A;  1X63 A; 
#chains in the Genus database with same CATH topology
 3ZPO A;  1V6G A;  4UF0 A;  4EZ4 A;  4HI9 B;  3IXE B;  2D8Z A;  4JCJ A;  4HI8 B;  2XUE A;  3NIL A;  2YPA C;  2DJ7 A;  2XJZ A;  1G47 A;  5FXW A;  2CUR A;  3F6Q B;  3NIH A;  2L4Z A;  4ASK A;  2MBV A;  2JTN A;  1IBI A;  2EHE A;  5A1L A;  1CTL A;  1B8T A;  2EGQ A;  5LKT A;  3NIM A;  1RUT X;  5LKZ A;  2L6Z C;  2DAR A;  3AVR A;  2O10 A;  2XQN T;  1WYH A;  1J2O A;  3MMK A;  5FP3 A;  5FY0 A;  5LKU A;  1A7I A;  4UF0 B;  4EZH A;  1X64 A;  3NIS A;  2XJY A;  3NIK A;  2CUP A;  1WIG A;  2CUQ A;  1IML A;  2O13 A;  2DLO A;  3NIJ A;  4BHW A;  5FXX A;  5FYM A;  1X6A A;  5FXZ A;  1QLI A;  2D8Y A;  5FXV A;  1CXX A;  1NYP A;  1X63 A;  1X61 A;  5FY1 A;  5FY7 A;  2D8X A;  2COR A;  1M3V A;  1U5S B;  1X68 A;  1X3H A;  3AVS A;  2L6Y B;  2DFY C;  2LXD A;  1X62 A;  5LKX A;  2KBX B;  2CO8 A;  2LZU A;  2CU8 A;  4KFZ A;  4EYU A;  2IYB E;  2MIU A;  3NIN A;  1X4L A;  3ZLI A; 
#chains in the Genus database with same CATH homology
 3ZPO A;  1V6G A;  4UF0 A;  4EZ4 A;  4HI9 B;  3IXE B;  2D8Z A;  4JCJ A;  4HI8 B;  2XUE A;  3NIL A;  2YPA C;  2DJ7 A;  2XJZ A;  1G47 A;  5FXW A;  2CUR A;  3F6Q B;  3NIH A;  2L4Z A;  4ASK A;  2MBV A;  2JTN A;  1IBI A;  2EHE A;  5A1L A;  1CTL A;  1B8T A;  2EGQ A;  5LKT A;  3NIM A;  1RUT X;  5LKZ A;  2L6Z C;  2DAR A;  3AVR A;  2O10 A;  2XQN T;  1WYH A;  1J2O A;  3MMK A;  5FP3 A;  5FY0 A;  5LKU A;  1A7I A;  4UF0 B;  4EZH A;  1X64 A;  3NIS A;  2XJY A;  3NIK A;  2CUP A;  1WIG A;  2CUQ A;  1IML A;  2O13 A;  2DLO A;  3NIJ A;  4BHW A;  5FXX A;  5FYM A;  1X6A A;  5FXZ A;  1QLI A;  2D8Y A;  5FXV A;  1CXX A;  1NYP A;  1X63 A;  1X61 A;  5FY1 A;  5FY7 A;  2D8X A;  2COR A;  1M3V A;  1U5S B;  1X68 A;  1X3H A;  3AVS A;  2L6Y B;  2DFY C;  2LXD A;  1X62 A;  5LKX A;  2KBX B;  2CO8 A;  2LZU A;  2CU8 A;  4KFZ A;  4EYU A;  2IYB E;  2MIU A;  3NIN A;  1X4L A;  3ZLI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2LXDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations