2MIUA

Structure of fhl2 lim adaptor and its interaction with ski
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
98
structure length
98
Chain Sequence
MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRHWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of FHL2 LIM adaptor and its Interaction with Ski
rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords Four and a half LIM domains protein 2
total genus 11
structure length 98
sequence length 98
ec nomenclature
pdb deposition date 2013-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2miuA00
2CURA 2DLOA 2CORA 2JTNA 2MBVA 2CO8A 1WIGA 2IYBE 1QLIA 4JCJA 1IMLA 2L6YB 2MIUA 2XQNT 4HI9B 2L4ZA 1X62A 2YPAC 2D8YA 2O10A 1WYHA 3F6QB 3MMKA 2CUPA 1RUTX 2DFYC 1V6GA 2CU8A 2EGQA 2L6ZC 2XJZA 2DARA 2DJ7A 2O13A 1NYPA 1X3HA 2CUQA 1CTLA 2D8XA 1X68A 1X61A 1U5SB 1B8TA 3IXEB 1IBIA 1X64A 1X63A 4HI8B 2D8ZA 2KBXB 1CXXA 2LZUA 1X6AA 1M3VA 2EHEA 1J2OA 2XJYA 1A7IA 1G47A 1X4LA 4KFZA 2LXDA
chains in the Genus database with same CATH superfamily
2CORA 3NIHA 4HI9B 5LKZA 5FY1A 1WYHA 4EZ4A 2CU8A 2EGQA 2D8XA 5FXWA 3AVRA 4EZHA 3NIKA 1X6AA 1M3VA 2XUEA 2XJYA 3ZPOA 1U5SB 2LXDA 2CURA 2CO8A 2IYBE 3NIJA 2L4ZA 1X62A 2YPAC 2O10A 3NILA 1V6GA 2XJZA 1X61A 1B8TA 5FY7A 5LKTA 2XQNT 2KBXB 1G47A 3AVSA 2DLOA 3NIMA 5FY0A 4ASKA 1WIGA 5FXXA 1IMLA 2D8YA 5LKXA 1RUTX 2L6ZC 2DARA 1X3HA 2CUQA 1X68A 3IXEB 1IBIA 1X63A 5A1LA 3ZLIA 2EHEA 5FXVA 1J2OA 4UF0B 1A7IA 5FP3A 4KFZA 3NISA 2JTNA 2MBVA 5FYMA 1QLIA 4EYUA 4JCJA 2L6YB 2MIUA 3NINA 5LKUA 3F6QB 3MMKA 2CUPA 4BHWA 2DFYC 2DJ7A 2O13A 1CTLA 1NYPA 5FXZA 1X64A 4HI8B 2D8ZA 1CXXA 2LZUA 4UF0A 1X4LA
chains in the Genus database with same CATH topology
2CORA 3NIHA 4HI9B 5LKZA 5FY1A 1WYHA 4EZ4A 2CU8A 2EGQA 2D8XA 5FXWA 3AVRA 4EZHA 3NIKA 1X6AA 1M3VA 2XUEA 2XJYA 3ZPOA 1U5SB 2LXDA 2CURA 2CO8A 2IYBE 3NIJA 2L4ZA 1X62A 2YPAC 2O10A 3NILA 1V6GA 2XJZA 1X61A 1B8TA 5FY7A 5LKTA 2XQNT 2KBXB 1G47A 3AVSA 2DLOA 3NIMA 5FY0A 4ASKA 1WIGA 5FXXA 1IMLA 2D8YA 5LKXA 1RUTX 2L6ZC 2DARA 1X3HA 2CUQA 1X68A 3IXEB 1IBIA 1X63A 5A1LA 3ZLIA 2EHEA 5FXVA 1J2OA 4UF0B 1A7IA 5FP3A 4KFZA 3NISA 2JTNA 2MBVA 5FYMA 1QLIA 4EYUA 4JCJA 2L6YB 2MIUA 3NINA 5LKUA 3F6QB 3MMKA 2CUPA 4BHWA 2DFYC 2DJ7A 2O13A 1CTLA 1NYPA 5FXZA 1X64A 4HI8B 2D8ZA 1CXXA 2LZUA 4UF0A 1X4LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CUR A;  2DLO A;  2COR A;  2JTN A;  2MBV A;  2CO8 A;  1WIG A;  2IYB E;  1QLI A;  4JCJ A;  1IML A;  2L6Y B;  2MIU A;  2XQN T;  4HI9 B;  2L4Z A;  1X62 A;  2YPA C;  2D8Y A;  2O10 A;  1WYH A;  3F6Q B;  3MMK A;  2CUP A;  1RUT X;  2DFY C;  1V6G A;  2CU8 A;  2EGQ A;  2L6Z C;  2XJZ A;  2DAR A;  2DJ7 A;  2O13 A;  1NYP A;  1X3H A;  2CUQ A;  1CTL A;  2D8X A;  1X68 A;  1X61 A;  1U5S B;  1B8T A;  3IXE B;  1IBI A;  1X64 A;  1X63 A;  4HI8 B;  2D8Z A;  2KBX B;  1CXX A;  2LZU A;  1X6A A;  1M3V A;  2EHE A;  1J2O A;  2XJY A;  1A7I A;  1G47 A;  1X4L A;  4KFZ A;  2LXD A; 
#chains in the Genus database with same CATH topology
 2COR A;  3NIH A;  4HI9 B;  5LKZ A;  5FY1 A;  1WYH A;  4EZ4 A;  2CU8 A;  2EGQ A;  2D8X A;  5FXW A;  3AVR A;  4EZH A;  3NIK A;  1X6A A;  1M3V A;  2XUE A;  2XJY A;  3ZPO A;  1U5S B;  2LXD A;  2CUR A;  2CO8 A;  2IYB E;  3NIJ A;  2L4Z A;  1X62 A;  2YPA C;  2O10 A;  3NIL A;  1V6G A;  2XJZ A;  1X61 A;  1B8T A;  5FY7 A;  5LKT A;  2XQN T;  2KBX B;  1G47 A;  3AVS A;  2DLO A;  3NIM A;  5FY0 A;  4ASK A;  1WIG A;  5FXX A;  1IML A;  2D8Y A;  5LKX A;  1RUT X;  2L6Z C;  2DAR A;  1X3H A;  2CUQ A;  1X68 A;  3IXE B;  1IBI A;  1X63 A;  5A1L A;  3ZLI A;  2EHE A;  5FXV A;  1J2O A;  4UF0 B;  1A7I A;  5FP3 A;  4KFZ A;  3NIS A;  2JTN A;  2MBV A;  5FYM A;  1QLI A;  4EYU A;  4JCJ A;  2L6Y B;  2MIU A;  3NIN A;  5LKU A;  3F6Q B;  3MMK A;  2CUP A;  4BHW A;  2DFY C;  2DJ7 A;  2O13 A;  1CTL A;  1NYP A;  5FXZ A;  1X64 A;  4HI8 B;  2D8Z A;  1CXX A;  2LZU A;  4UF0 A;  1X4L A; 
#chains in the Genus database with same CATH homology
 2COR A;  3NIH A;  4HI9 B;  5LKZ A;  5FY1 A;  1WYH A;  4EZ4 A;  2CU8 A;  2EGQ A;  2D8X A;  5FXW A;  3AVR A;  4EZH A;  3NIK A;  1X6A A;  1M3V A;  2XUE A;  2XJY A;  3ZPO A;  1U5S B;  2LXD A;  2CUR A;  2CO8 A;  2IYB E;  3NIJ A;  2L4Z A;  1X62 A;  2YPA C;  2O10 A;  3NIL A;  1V6G A;  2XJZ A;  1X61 A;  1B8T A;  5FY7 A;  5LKT A;  2XQN T;  2KBX B;  1G47 A;  3AVS A;  2DLO A;  3NIM A;  5FY0 A;  4ASK A;  1WIG A;  5FXX A;  1IML A;  2D8Y A;  5LKX A;  1RUT X;  2L6Z C;  2DAR A;  1X3H A;  2CUQ A;  1X68 A;  3IXE B;  1IBI A;  1X63 A;  5A1L A;  3ZLI A;  2EHE A;  5FXV A;  1J2O A;  4UF0 B;  1A7I A;  5FP3 A;  4KFZ A;  3NIS A;  2JTN A;  2MBV A;  5FYM A;  1QLI A;  4EYU A;  4JCJ A;  2L6Y B;  2MIU A;  3NIN A;  5LKU A;  3F6Q B;  3MMK A;  2CUP A;  4BHW A;  2DFY C;  2DJ7 A;  2O13 A;  1CTL A;  1NYP A;  5FXZ A;  1X64 A;  4HI8 B;  2D8Z A;  1CXX A;  2LZU A;  4UF0 A;  1X4L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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