2MIUA

Structure of fhl2 lim adaptor and its interaction with ski
Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
98
structure length
98
Chain Sequence
MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRHWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (8-11)TIV2 (7-10)EMPTYS3 (38-39)S4 (46-47)TI2 (41-44)TIV5 (40-43)TI4 (62-65)S6 (59-62)TI5 (63-66)TIV8 (68-71)S8 (87-89)S7 (80-82)TI7 (83-86)AH2 (90-97)S2 (25-27)S1 (20-22)AH1 (29-36)S5 (53-56)Updating...
connected with : NaN
molecule tags Protein binding
source organism Homo sapiens
publication title Structure of FHL2 LIM adaptor and its Interaction with Ski
rcsb
molecule keywords Four and a half LIM domains protein 2
total genus 11
structure length 98
sequence length 98
ec nomenclature
pdb deposition date 2013-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2miuA00
1X61A 1X4LA 2KBXB 3IXEB 1U5SB 1CTLA 2XJZA 1WIGA 1X3HA 2LZUA 2JTNA 1WYHA 1NYPA 2D8XA 2L6ZC 2O10A 2CORA 1V6GA 3F6QB 2CUPA 2EGQA 2YPAC 2CURA 1X64A 1QLIA 1IBIA 1G47A 2D8YA 1B8TA 2CUQA 2DLOA 2CO8A 2IYBE 4HI8B 4HI9B 2XQNT 1J2OA 2D8ZA 2L6YB 1CXXA 2EHEA 2MIUA 1IMLA 1A7IA 1RUTX 4JCJA 2CU8A 2DJ7A 1X63A 1X62A 2DARA 4KFZA 1X68A 2LXDA 1M3VA 2MBVA 3MMKA 2O13A 1X6AA 2DFYC 2L4ZA 2XJYA
chains in the Genus database with same CATH superfamily
1X61A 1X4LA 4BHWA 3ZLIA 1WYHA 5LKXA 1V6GA 2CURA 1X64A 2D8YA 1B8TA 2DLOA 1J2OA 5FXXA 5FXWA 1CXXA 4ASKA 3AVSA 5FYMA 2DJ7A 4EYUA 2XUEA 1M3VA 3NIHA 5FXVA 3NIJA 2XJYA 2XJZA 2JTNA 1NYPA 2D8XA 2L6ZC 2YPAC 4UF0A 4UF0B 4EZ4A 5LKUA 2CO8A 4HI9B 2XQNT 3NIKA 2D8ZA 2L6YB 5FY0A 2DARA 1X68A 3NISA 2LXDA 5FY7A 3NILA 3MMKA 4EZHA 5LKTA 2KBXB 1X3HA 2LZUA 3NINA 2O10A 3F6QB 2CUPA 5LKZA 1IBIA 1QLIA 3AVRA 1G47A 3ZPOA 2CUQA 5A1LA 5FP3A 3NIMA 2IYBE 2MIUA 1RUTX 1X63A 2MBVA 1X6AA 2DFYC 2L4ZA 3IXEB 1U5SB 5FXZA 1CTLA 1WIGA 2CORA 2EGQA 4HI8B 2EHEA 5FY1A 1A7IA 4JCJA 2CU8A 1X62A 4KFZA 2O13A 1IMLA
chains in the Genus database with same CATH topology
1X61A 1X4LA 4BHWA 3ZLIA 1WYHA 5LKXA 1V6GA 2CURA 1X64A 2D8YA 1B8TA 2DLOA 1J2OA 5FXXA 5FXWA 1CXXA 4ASKA 3AVSA 5FYMA 2DJ7A 4EYUA 2XUEA 1M3VA 3NIHA 5FXVA 3NIJA 2XJYA 2XJZA 2JTNA 1NYPA 2D8XA 2L6ZC 2YPAC 4UF0A 4UF0B 4EZ4A 5LKUA 2CO8A 4HI9B 2XQNT 3NIKA 2D8ZA 2L6YB 5FY0A 2DARA 1X68A 3NISA 2LXDA 5FY7A 3NILA 3MMKA 4EZHA 5LKTA 2KBXB 1X3HA 2LZUA 3NINA 2O10A 3F6QB 2CUPA 5LKZA 1IBIA 1QLIA 3AVRA 1G47A 3ZPOA 2CUQA 5A1LA 5FP3A 3NIMA 2IYBE 2MIUA 1RUTX 1X63A 2MBVA 1X6AA 2DFYC 2L4ZA 3IXEB 1U5SB 5FXZA 1CTLA 1WIGA 2CORA 2EGQA 4HI8B 2EHEA 5FY1A 1A7IA 4JCJA 2CU8A 1X62A 4KFZA 2O13A 1IMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X61 A;  1X4L A;  2KBX B;  3IXE B;  1U5S B;  1CTL A;  2XJZ A;  1WIG A;  1X3H A;  2LZU A;  2JTN A;  1WYH A;  1NYP A;  2D8X A;  2L6Z C;  2O10 A;  2COR A;  1V6G A;  3F6Q B;  2CUP A;  2EGQ A;  2YPA C;  2CUR A;  1X64 A;  1QLI A;  1IBI A;  1G47 A;  2D8Y A;  1B8T A;  2CUQ A;  2DLO A;  2CO8 A;  2IYB E;  4HI8 B;  4HI9 B;  2XQN T;  1J2O A;  2D8Z A;  2L6Y B;  1CXX A;  2EHE A;  2MIU A;  1IML A;  1A7I A;  1RUT X;  4JCJ A;  2CU8 A;  2DJ7 A;  1X63 A;  1X62 A;  2DAR A;  4KFZ A;  1X68 A;  2LXD A;  1M3V A;  2MBV A;  3MMK A;  2O13 A;  1X6A A;  2DFY C;  2L4Z A;  2XJY A; 
#chains in the Genus database with same CATH topology
 1X61 A;  1X4L A;  4BHW A;  3ZLI A;  1WYH A;  5LKX A;  1V6G A;  2CUR A;  1X64 A;  2D8Y A;  1B8T A;  2DLO A;  1J2O A;  5FXX A;  5FXW A;  1CXX A;  4ASK A;  3AVS A;  5FYM A;  2DJ7 A;  4EYU A;  2XUE A;  1M3V A;  3NIH A;  5FXV A;  3NIJ A;  2XJY A;  2XJZ A;  2JTN A;  1NYP A;  2D8X A;  2L6Z C;  2YPA C;  4UF0 A;  4UF0 B;  4EZ4 A;  5LKU A;  2CO8 A;  4HI9 B;  2XQN T;  3NIK A;  2D8Z A;  2L6Y B;  5FY0 A;  2DAR A;  1X68 A;  3NIS A;  2LXD A;  5FY7 A;  3NIL A;  3MMK A;  4EZH A;  5LKT A;  2KBX B;  1X3H A;  2LZU A;  3NIN A;  2O10 A;  3F6Q B;  2CUP A;  5LKZ A;  1IBI A;  1QLI A;  3AVR A;  1G47 A;  3ZPO A;  2CUQ A;  5A1L A;  5FP3 A;  3NIM A;  2IYB E;  2MIU A;  1RUT X;  1X63 A;  2MBV A;  1X6A A;  2DFY C;  2L4Z A;  3IXE B;  1U5S B;  5FXZ A;  1CTL A;  1WIG A;  2COR A;  2EGQ A;  4HI8 B;  2EHE A;  5FY1 A;  1A7I A;  4JCJ A;  2CU8 A;  1X62 A;  4KFZ A;  2O13 A;  1IML A; 
#chains in the Genus database with same CATH homology
 1X61 A;  1X4L A;  4BHW A;  3ZLI A;  1WYH A;  5LKX A;  1V6G A;  2CUR A;  1X64 A;  2D8Y A;  1B8T A;  2DLO A;  1J2O A;  5FXX A;  5FXW A;  1CXX A;  4ASK A;  3AVS A;  5FYM A;  2DJ7 A;  4EYU A;  2XUE A;  1M3V A;  3NIH A;  5FXV A;  3NIJ A;  2XJY A;  2XJZ A;  2JTN A;  1NYP A;  2D8X A;  2L6Z C;  2YPA C;  4UF0 A;  4UF0 B;  4EZ4 A;  5LKU A;  2CO8 A;  4HI9 B;  2XQN T;  3NIK A;  2D8Z A;  2L6Y B;  5FY0 A;  2DAR A;  1X68 A;  3NIS A;  2LXD A;  5FY7 A;  3NIL A;  3MMK A;  4EZH A;  5LKT A;  2KBX B;  1X3H A;  2LZU A;  3NIN A;  2O10 A;  3F6Q B;  2CUP A;  5LKZ A;  1IBI A;  1QLI A;  3AVR A;  1G47 A;  3ZPO A;  2CUQ A;  5A1L A;  5FP3 A;  3NIM A;  2IYB E;  2MIU A;  1RUT X;  1X63 A;  2MBV A;  1X6A A;  2DFY C;  2L4Z A;  3IXE B;  1U5S B;  5FXZ A;  1CTL A;  1WIG A;  2COR A;  2EGQ A;  4HI8 B;  2EHE A;  5FY1 A;  1A7I A;  4JCJ A;  2CU8 A;  1X62 A;  4KFZ A;  2O13 A;  1IML A; 
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