2MQD | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	119
structure length	119
Chain Sequence	GHMKFTDQQIGVLAGLAISPEWLKQNIAANQLVYGIVKPSDTVPAGVDDYSYLVAADDQDGTIIFFKAEGQTVIIKYTSQRNTKLKAKALTLSQLKKEFYQTRSQKREVDDYVAGLRTE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	NMR structure of the hypotheical protein Lreu_0056 from Lactobacillus reuteri rcsb
molecule keywords	Uncharacterized protein
molecule tags	Structural genomics, unknown function
source organism	Lactobacillus reuteri dsm 20016
total genus	27
structure length	119
sequence length	119
ec nomenclature
pdb deposition date	2014-06-18

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.60	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	2mqdA00

2MQDA
chains in the Genus database with same CATH superfamily

2P9PF 1L2WA 1TYQD 3RSED 3VX7B 4GSLC 2BHOA 1RY9A 3DXMF 1XKPC 3DXKF 3EPUA 4XEIF 2P9UD 2P9KF 3DWLF 3VX8B 3ULED 1S28A 1JYOA 4EBRA 3UKRF 1U2VF 4JD2F 1K6ZA 2P9SD 3TU3A 2XGAA 1N5BA 2BSIA 1K8KF 2LPUA 2P9ID 2P9PD 3UKUF 2P9IF 1K3SA 3DXMD 3DXKD 4XEID 2OD0A 2P9KD 2DYTA 3DWLD 4G6TA 4GF3A 4AKXA 2BSJA 3UKRD 1U2VD 4JD2D 1TYQF 2P9NF 2P9LF 1TTWA 2PLGA 3RSEF 3UKUD 1K8KD 4JMFB 2P9UF 3CXJA 1K3EA 1JYAA 2MQDA 3ULEF 2FM8A 1XKPB 2KC5A 3KXYA 2BSHA 2P9SF 4H5BA 2P9ND 2P9LD
chains in the Genus database with same CATH topology

2P9PF 1L2WA 1TYQD 3RSED 3VX7B 4GSLC 2BHOA 1RY9A 3DXMF 1XKPC 3DXKF 3EPUA 4XEIF 2P9UD 2P9KF 3DWLF 3VX8B 3ULED 1S28A 1JYOA 4EBRA 3UKRF 1U2VF 4JD2F 1K6ZA 2P9SD 3TU3A 2XGAA 1N5BA 2BSIA 1K8KF 2LPUA 2P9ID 2P9PD 3UKUF 2P9IF 1K3SA 3DXMD 3DXKD 4XEID 2P9KD 3DWLD 2DYTA 4G6TA 4GF3A 4AKXA 2BSJA 3UKRD 1U2VD 4JD2D 1TYQF 2P9NF 2P9LF 1TTWA 2PLGA 3RSEF 3UKUD 1K8KD 4JMFB 2P9UF 3CXJA 1K3EA 1JYAA 2MQDA 3ULEF 2FM8A 1XKPB 2KC5A 3KXYA 2BSHA 2P9SF 4H5BA 2P9ND 2P9LD
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2MQD A; 
#chains in the Genus database with same CATH topology
 2P9P F;  1L2W A;  1TYQ D;  3RSE D;  3VX7 B;  4GSL C;  2BHO A;  1RY9 A;  3DXM F;  1XKP C;  3DXK F;  3EPU A;  4XEI F;  2P9U D;  2P9K F;  3DWL F;  3VX8 B;  3ULE D;  1S28 A;  1JYO A;  4EBR A;  3UKR F;  1U2V F;  4JD2 F;  1K6Z A;  2P9S D;  3TU3 A;  2XGA A;  1N5B A;  2BSI A;  1K8K F;  2LPU A;  2P9I D;  2P9P D;  3UKU F;  2P9I F;  1K3S A;  3DXM D;  3DXK D;  4XEI D;  2OD0 A;  2P9K D;  2DYT A;  3DWL D;  4G6T A;  4GF3 A;  4AKX A;  2BSJ A;  3UKR D;  1U2V D;  4JD2 D;  1TYQ F;  2P9N F;  2P9L F;  1TTW A;  2PLG A;  3RSE F;  3UKU D;  1K8K D;  4JMF B;  2P9U F;  3CXJ A;  1K3E A;  1JYA A;  2MQD A;  3ULE F;  2FM8 A;  1XKP B;  2KC5 A;  3KXY A;  2BSH A;  2P9S F;  4H5B A;  2P9N D;  2P9L D; 
#chains in the Genus database with same CATH homology
 2P9P F;  1L2W A;  1TYQ D;  3RSE D;  3VX7 B;  4GSL C;  2BHO A;  1RY9 A;  3DXM F;  1XKP C;  3DXK F;  3EPU A;  4XEI F;  2P9U D;  2P9K F;  3DWL F;  3VX8 B;  3ULE D;  1S28 A;  1JYO A;  4EBR A;  3UKR F;  1U2V F;  4JD2 F;  1K6Z A;  2P9S D;  3TU3 A;  2XGA A;  1N5B A;  2BSI A;  1K8K F;  2LPU A;  2P9I D;  2P9P D;  3UKU F;  2P9I F;  1K3S A;  3DXM D;  3DXK D;  4XEI D;  2P9K D;  3DWL D;  2DYT A;  4G6T A;  4GF3 A;  4AKX A;  2BSJ A;  3UKR D;  1U2V D;  4JD2 D;  1TYQ F;  2P9N F;  2P9L F;  1TTW A;  2PLG A;  3RSE F;  3UKU D;  1K8K D;  4JMF B;  2P9U F;  3CXJ A;  1K3E A;  1JYA A;  2MQD A;  3ULE F;  2FM8 A;  1XKP B;  2KC5 A;  3KXY A;  2BSH A;  2P9S F;  4H5B A;  2P9N D;  2P9L D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2MQDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN