2O5JE

Crystal structure of the t. thermophilus rnap polymerase elongation complex with the ntp substrate analog
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
95
structure length
95
Chain Sequence
AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLVPEDRLQKEMERLYPVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
molecule tags Transferase/dna-rna hybrid
publication title Structural basis for substrate loading in bacterial RNA polymerase.
pubmed doi rcsb
molecule keywords 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP
total genus 19
structure length 95
sequence length 95
chains with identical sequence O
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2006-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2o5jE00
4Y52F 4YFNE 4YG2E 3GTKF 4G7ZE 3S17F 3GTGF 2PMZK 4BXXF 5C4JF 3PO2F 3HOWF 4A3LF 4YFKE 1TWFF 2BE5E 1TWAF 4G7OE 4KN4E 4JK1E 3HOZF 2O5IE 5M3MF 3M3YF 4KMUE 3S1QF 1HQME 3HKZK 5FJ8F 2A6EE 5M3FF 3RZDF 4OINE 4A3JF 3I4MF 2R7ZF 4BBSF 1I6HF 1I50F 5D4DE 4XSZE 3GTPF 5M5YF 4OIRE 3S2DF 2Y0SI 2JA6F 2JA7F 4ZH4E 4A3BF 1TWCF 2CW0E 2E2HF 3WODE 2VUMF 3GTJF 1SFOF 4A3EF 5C44F 2PPBE 4KN7E 2NVYF 5D4CE 2E2IF 4BY1F 4A3FF 2WB1I 4XLPE 3S1MF 3EQLE 2A68E 3S1NF 4MEYE 5BYHE 4LK0E 3K7AF 3S15F 3S2HF 3RZOF 4A93F 4Y7NF 1Y1WF 4A3DF 1I3QF 1TWHF 3HOXF 3S1RF 5IP7F 2NVQF 3DXJE 4LJZE 2R93F 4A3GF 4LK1E 4XLNE 4MQ9E 2NVXF 4YFXE 4C3IF 3S14F 1IW7E 1I6VE 2JA5F 2A6HE 4XSXE 3FKIF 5E17E 5C3EF 3GTQF 4A3IF 1ZYRE 2JA8F 4BY7F 3HOYF 1Y1VF 3H3VG 4Q4ZE 1YNJK 3M4OF 2O5JE 4LLGE 5TMCE 4OIPE 1WCMF 4GZYE 4X6AF 4G7HE 5C4XF 4AYBK 2YU9F 5IP9F 5FLMF 4A3KF 1TWGF 4A3CF 3I4NF 5M5XF 4MEXE 3HOUF 2E2JF 3GTMF 4Q5SE 3CQZF 1K83F 2WAQK 1SMYE 3H0GF 4OIQE 5IYBF 5D4EE 2NVTF 3HOVF 5M5WF 2B63F 3GTLF 5E18E 5IYCF 4BBRF 4C2MF 4A3MF 5IPLE 1YNNK 3GTOF 2R92F 5IYDF 2A69E 1QKLA 4C3HF 1R9TF 4OIOE 3S16F 4C3JF 3PO3F 5TMFE
chains in the Genus database with same CATH superfamily
4Y52F 4YFNE 3S15E 4YG2E 3GTKF 4G7ZE 3S17F 4Y7NE 1WCME 3GTGF 1Y1WE 2PMZK 4BXXF 1TWHE 5C4JF 3HOXE 5FLME 3S1RE 2YU9E 5IP7E 2NVQE 1TWGE 3PO2F 4A3CE 5M5XE 3HOWF 4A3LF 4YFKE 1TWFF 2BE5E 2Y0SH 1TWAF 3HOUE 4KN4E 4JK1E 2E2JE 3HOZF 4C3IE 4G7OE 3GTME 2O5IE 1K83E 5M3MF 3M3YF 4KMUE 3S1QF 3H0GE 1HQME 3HKZK 2JA5E 5IYBE 5FJ8F 2A6EE 2NVTE 5M5WE 3HOVE 5M3FF 3RZDF 5IYCE 4BBRE 4OINE 4A3JF 4A3ME 2WB1H 2JA8E 3GTOE 3I4MF 2R7ZF 4BBSF 1I6HF 1I50F 5IYDE 2R92E 5D4DE 4XSZE 4C3HE 1R9TE 3GTPF 5M5YF 4OIRE 4C3JE 3PO3E 3S2DF 2Y0SI 4Y52E 2JA6F 2JA7F 4ZH4E 4A3BF 3GTKE 4X6AE 1TWCF 5C4XE 2CW0E 2E2HF 3WODE 2VUMF 3GTGE 5IP9E 4AYBH 3GTJF 4A3KE 4BXXE 1SFOF 4A3EF 3I4NE 5C44F 2PPBE 4KN7E 2NVYF 5D4CE 2E2IF 3HOWE 4BY1F 4A3FF 1TWFE 2WB1I 4XLPE 3S1MF 3CQZE 3HOZE 3EQLE 2A68E 2WAQH 3S1QE 3GTLE 2B63E 4QIWH 3S1NF 4MEYE 5BYHE 5FJ8E 4LK0E 3K7AF 4C2ME 3S2HF 3RZOF 3S15F 4A93F 4Y7NF 4A3JE 1Y1WF 4A3DF 1I3QF 1TWHF 2R7ZE 3HOXF 3S1RF 1I50E 5IP7F 2NVQF 3GTPE 3S16E 3DXJE 4LJZE 2R93F 4A3GF 4LK1E 4XLNE 4MQ9E 2NVXF 3S17E 3S2DE 4YFXE 4C3IF 4A3BE 1DZFA 1TWCE 3S14F 2VUME 2PMZH 1IW7E 5C4JE 1I6VE 2JA5F 2A6HE 4XSXE 3FKIF 5E17E 4QIWK 1SFOE 4A3EE 3PO2E 5C3EF 3GTQF 4A3IF 4A3LE 2NVYE 2E2IE 1ZYRE 1TWAE 4BY1E 2JA8F 3H3VF 4BY7F 4A3FE 3S1ME 3HOYF 5M3ME 1Y1VF 3M3YE 3H3VG 4Q4ZE 1YNJK 3HKZH 3M4OF 3S1NE 2O5JE 5M3FE 3RZDE 4LLGE 3K7AE 5TMCE 1WCMF 4OIPE 3RZOE 3S2HE 4G7HE 4GZYE 4X6AF 4A93E 5C4XF 4AYBK 2YU9F 3I4ME 5IP9F 5FLMF 4A3DE 1I3QE 4A3KF 4BBSE 1TWGF 1I6HE 4A3CF 3I4NF 1EIKA 5M5XF 5M5YE 4MEXE 2R93E 3HOUF 2E2JF 2JA6E 2JA7E 4A3GE 2NVXE 3GTMF 4Q5SE 3CQZF 1K83F 2E2HE 2WAQK 1SMYE 3H0GF 4OIQE 3GTJE 5IYBF 5D4EE 3S14E 2NVTF 3HOVF 5M5WF 2B63F 3GTLF 5E18E 3FKIE 5IYCF 4BBRF 5C44E 4C2MF 5C3EE 3GTQE 4A3IE 4A3MF 5IPLE 1YNNK 3GTOF 2R92F 5IYDF 4BY7E 2A69E 3HOYE 1QKLA 4C3HF 1R9TF 1Y1VE 4OIOE 3S16F 4C3JF 3PO3F 5TMFE 3M4OE 2KRXA
chains in the Genus database with same CATH topology
4Y52F 4YFNE 4YG2E 3GTKF 4G7ZE 3S17F 3GTGF 2PMZK 4BXXF 5C4JF 3PO2F 3HOWF 4A3LF 4YFKE 1TWFF 2BE5E 1TWAF 4G7OE 4KN4E 4JK1E 3HOZF 2O5IE 5M3MF 3M3YF 4KMUE 3S1QF 1HQME 3HKZK 5FJ8F 2A6EE 5M3FF 3RZDF 4OINE 4A3JF 3I4MF 2R7ZF 4BBSF 1I6HF 1I50F 5D4DE 4XSZE 3GTPF 5M5YF 4OIRE 3S2DF 2Y0SI 2JA6F 2JA7F 4ZH4E 4A3BF 1TWCF 2CW0E 2E2HF 3WODE 2VUMF 3GTJF 1SFOF 4A3EF 5C44F 2PPBE 4KN7E 2NVYF 5D4CE 2E2IF 4BY1F 4A3FF 2WB1I 4XLPE 3S1MF 3EQLE 2A68E 3S1NF 4MEYE 5BYHE 4LK0E 3K7AF 3S15F 3S2HF 3RZOF 4A93F 4Y7NF 1Y1WF 4A3DF 1I3QF 1TWHF 3HOXF 3S1RF 5IP7F 2NVQF 3DXJE 4LJZE 2R93F 4A3GF 4LK1E 4XLNE 4MQ9E 2NVXF 4YFXE 4C3IF 3S14F 1IW7E 1I6VE 2JA5F 2A6HE 4XSXE 3FKIF 5E17E 4QIWK 5C3EF 3GTQF 4A3IF 1ZYRE 2JA8F 4BY7F 3HOYF 1Y1VF 3H3VG 4Q4ZE 1YNJK 3M4OF 2O5JE 4LLGE 5TMCE 4OIPE 1WCMF 4GZYE 4X6AF 4G7HE 5C4XF 4AYBK 2YU9F 5IP9F 5FLMF 4A3KF 1TWGF 4A3CF 3I4NF 5M5XF 4MEXE 3HOUF 2E2JF 3GTMF 4Q5SE 3CQZF 1K83F 2WAQK 1SMYE 3H0GF 4OIQE 5IYBF 5D4EE 2NVTF 3HOVF 5M5WF 2B63F 3GTLF 5E18E 5IYCF 4BBRF 4C2MF 4A3MF 5IPLE 1YNNK 3GTOF 2R92F 5IYDF 2A69E 1QKLA 4C3HF 1R9TF 4OIOE 3S16F 4C3JF 3PO3F 5TMFE 2KRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Y52 F;  4YFN E;  4YG2 E;  3GTK F;  4G7Z E;  3S17 F;  3GTG F;  2PMZ K;  4BXX F;  5C4J F;  3PO2 F;  3HOW F;  4A3L F;  4YFK E;  1TWF F;  2BE5 E;  1TWA F;  4G7O E;  4KN4 E;  4JK1 E;  3HOZ F;  2O5I E;  5M3M F;  3M3Y F;  4KMU E;  3S1Q F;  1HQM E;  3HKZ K;  5FJ8 F;  2A6E E;  5M3F F;  3RZD F;  4OIN E;  4A3J F;  3I4M F;  2R7Z F;  4BBS F;  1I6H F;  1I50 F;  5D4D E;  4XSZ E;  3GTP F;  5M5Y F;  4OIR E;  3S2D F;  2Y0S I;  2JA6 F;  2JA7 F;  4ZH4 E;  4A3B F;  1TWC F;  2CW0 E;  2E2H F;  3WOD E;  2VUM F;  3GTJ F;  1SFO F;  4A3E F;  5C44 F;  2PPB E;  4KN7 E;  2NVY F;  5D4C E;  2E2I F;  4BY1 F;  4A3F F;  2WB1 I;  4XLP E;  3S1M F;  3EQL E;  2A68 E;  3S1N F;  4MEY E;  5BYH E;  4LK0 E;  3K7A F;  3S15 F;  3S2H F;  3RZO F;  4A93 F;  4Y7N F;  1Y1W F;  4A3D F;  1I3Q F;  1TWH F;  3HOX F;  3S1R F;  5IP7 F;  2NVQ F;  3DXJ E;  4LJZ E;  2R93 F;  4A3G F;  4LK1 E;  4XLN E;  4MQ9 E;  2NVX F;  4YFX E;  4C3I F;  3S14 F;  1IW7 E;  1I6V E;  2JA5 F;  2A6H E;  4XSX E;  3FKI F;  5E17 E;  5C3E F;  3GTQ F;  4A3I F;  1ZYR E;  2JA8 F;  4BY7 F;  3HOY F;  1Y1V F;  3H3V G;  4Q4Z E;  1YNJ K;  3M4O F;  2O5J E;  4LLG E;  5TMC E;  4OIP E;  1WCM F;  4GZY E;  4X6A F;  4G7H E;  5C4X F;  4AYB K;  2YU9 F;  5IP9 F;  5FLM F;  4A3K F;  1TWG F;  4A3C F;  3I4N F;  5M5X F;  4MEX E;  3HOU F;  2E2J F;  3GTM F;  4Q5S E;  3CQZ F;  1K83 F;  2WAQ K;  1SMY E;  3H0G F;  4OIQ E;  5IYB F;  5D4E E;  2NVT F;  3HOV F;  5M5W F;  2B63 F;  3GTL F;  5E18 E;  5IYC F;  4BBR F;  4C2M F;  4A3M F;  5IPL E;  1YNN K;  3GTO F;  2R92 F;  5IYD F;  2A69 E;  1QKL A;  4C3H F;  1R9T F;  4OIO E;  3S16 F;  4C3J F;  3PO3 F;  5TMF E; 
#chains in the Genus database with same CATH topology
 4Y52 F;  4YFN E;  3S15 E;  4YG2 E;  3GTK F;  4G7Z E;  3S17 F;  4Y7N E;  1WCM E;  3GTG F;  1Y1W E;  2PMZ K;  4BXX F;  1TWH E;  5C4J F;  3HOX E;  5FLM E;  3S1R E;  2YU9 E;  5IP7 E;  2NVQ E;  1TWG E;  3PO2 F;  4A3C E;  5M5X E;  3HOW F;  4A3L F;  4YFK E;  1TWF F;  2BE5 E;  2Y0S H;  1TWA F;  3HOU E;  4KN4 E;  4JK1 E;  2E2J E;  3HOZ F;  4C3I E;  4G7O E;  3GTM E;  2O5I E;  1K83 E;  5M3M F;  3M3Y F;  4KMU E;  3S1Q F;  3H0G E;  1HQM E;  3HKZ K;  2JA5 E;  5IYB E;  5FJ8 F;  2A6E E;  2NVT E;  5M5W E;  3HOV E;  5M3F F;  3RZD F;  5IYC E;  4BBR E;  4OIN E;  4A3J F;  4A3M E;  2WB1 H;  2JA8 E;  3GTO E;  3I4M F;  2R7Z F;  4BBS F;  1I6H F;  1I50 F;  5IYD E;  2R92 E;  5D4D E;  4XSZ E;  4C3H E;  1R9T E;  3GTP F;  5M5Y F;  4OIR E;  4C3J E;  3PO3 E;  3S2D F;  2Y0S I;  4Y52 E;  2JA6 F;  2JA7 F;  4ZH4 E;  4A3B F;  3GTK E;  4X6A E;  1TWC F;  5C4X E;  2CW0 E;  2E2H F;  3WOD E;  2VUM F;  3GTG E;  5IP9 E;  4AYB H;  3GTJ F;  4A3K E;  4BXX E;  1SFO F;  4A3E F;  3I4N E;  5C44 F;  2PPB E;  4KN7 E;  2NVY F;  5D4C E;  2E2I F;  3HOW E;  4BY1 F;  4A3F F;  1TWF E;  2WB1 I;  4XLP E;  3S1M F;  3CQZ E;  3HOZ E;  3EQL E;  2A68 E;  2WAQ H;  3S1Q E;  3GTL E;  2B63 E;  4QIW H;  3S1N F;  4MEY E;  5BYH E;  5FJ8 E;  4LK0 E;  3K7A F;  4C2M E;  3S2H F;  3RZO F;  3S15 F;  4A93 F;  4Y7N F;  4A3J E;  1Y1W F;  4A3D F;  1I3Q F;  1TWH F;  2R7Z E;  3HOX F;  3S1R F;  1I50 E;  5IP7 F;  2NVQ F;  3GTP E;  3S16 E;  3DXJ E;  4LJZ E;  2R93 F;  4A3G F;  4LK1 E;  4XLN E;  4MQ9 E;  2NVX F;  3S17 E;  3S2D E;  4YFX E;  4C3I F;  4A3B E;  1DZF A;  1TWC E;  3S14 F;  2VUM E;  2PMZ H;  1IW7 E;  5C4J E;  1I6V E;  2JA5 F;  2A6H E;  4XSX E;  3FKI F;  5E17 E;  4QIW K;  1SFO E;  4A3E E;  3PO2 E;  5C3E F;  3GTQ F;  4A3I F;  4A3L E;  2NVY E;  2E2I E;  1ZYR E;  1TWA E;  4BY1 E;  2JA8 F;  3H3V F;  4BY7 F;  4A3F E;  3S1M E;  3HOY F;  5M3M E;  1Y1V F;  3M3Y E;  3H3V G;  4Q4Z E;  1YNJ K;  3HKZ H;  3M4O F;  3S1N E;  2O5J E;  5M3F E;  3RZD E;  4LLG E;  3K7A E;  5TMC E;  1WCM F;  4OIP E;  3RZO E;  3S2H E;  4G7H E;  4GZY E;  4X6A F;  4A93 E;  5C4X F;  4AYB K;  2YU9 F;  3I4M E;  5IP9 F;  5FLM F;  4A3D E;  1I3Q E;  4A3K F;  4BBS E;  1TWG F;  1I6H E;  4A3C F;  3I4N F;  1EIK A;  5M5X F;  5M5Y E;  4MEX E;  2R93 E;  3HOU F;  2E2J F;  2JA6 E;  2JA7 E;  4A3G E;  2NVX E;  3GTM F;  4Q5S E;  3CQZ F;  1K83 F;  2E2H E;  2WAQ K;  1SMY E;  3H0G F;  4OIQ E;  3GTJ E;  5IYB F;  5D4E E;  3S14 E;  2NVT F;  3HOV F;  5M5W F;  2B63 F;  3GTL F;  5E18 E;  3FKI E;  5IYC F;  4BBR F;  5C44 E;  4C2M F;  5C3E E;  3GTQ E;  4A3I E;  4A3M F;  5IPL E;  1YNN K;  3GTO F;  2R92 F;  5IYD F;  4BY7 E;  2A69 E;  3HOY E;  1QKL A;  4C3H F;  1R9T F;  1Y1V E;  4OIO E;  3S16 F;  4C3J F;  3PO3 F;  5TMF E;  3M4O E;  2KRX A; 
#chains in the Genus database with same CATH homology
 4Y52 F;  4YFN E;  4YG2 E;  3GTK F;  4G7Z E;  3S17 F;  3GTG F;  2PMZ K;  4BXX F;  5C4J F;  3PO2 F;  3HOW F;  4A3L F;  4YFK E;  1TWF F;  2BE5 E;  1TWA F;  4G7O E;  4KN4 E;  4JK1 E;  3HOZ F;  2O5I E;  5M3M F;  3M3Y F;  4KMU E;  3S1Q F;  1HQM E;  3HKZ K;  5FJ8 F;  2A6E E;  5M3F F;  3RZD F;  4OIN E;  4A3J F;  3I4M F;  2R7Z F;  4BBS F;  1I6H F;  1I50 F;  5D4D E;  4XSZ E;  3GTP F;  5M5Y F;  4OIR E;  3S2D F;  2Y0S I;  2JA6 F;  2JA7 F;  4ZH4 E;  4A3B F;  1TWC F;  2CW0 E;  2E2H F;  3WOD E;  2VUM F;  3GTJ F;  1SFO F;  4A3E F;  5C44 F;  2PPB E;  4KN7 E;  2NVY F;  5D4C E;  2E2I F;  4BY1 F;  4A3F F;  2WB1 I;  4XLP E;  3S1M F;  3EQL E;  2A68 E;  3S1N F;  4MEY E;  5BYH E;  4LK0 E;  3K7A F;  3S15 F;  3S2H F;  3RZO F;  4A93 F;  4Y7N F;  1Y1W F;  4A3D F;  1I3Q F;  1TWH F;  3HOX F;  3S1R F;  5IP7 F;  2NVQ F;  3DXJ E;  4LJZ E;  2R93 F;  4A3G F;  4LK1 E;  4XLN E;  4MQ9 E;  2NVX F;  4YFX E;  4C3I F;  3S14 F;  1IW7 E;  1I6V E;  2JA5 F;  2A6H E;  4XSX E;  3FKI F;  5E17 E;  4QIW K;  5C3E F;  3GTQ F;  4A3I F;  1ZYR E;  2JA8 F;  4BY7 F;  3HOY F;  1Y1V F;  3H3V G;  4Q4Z E;  1YNJ K;  3M4O F;  2O5J E;  4LLG E;  5TMC E;  4OIP E;  1WCM F;  4GZY E;  4X6A F;  4G7H E;  5C4X F;  4AYB K;  2YU9 F;  5IP9 F;  5FLM F;  4A3K F;  1TWG F;  4A3C F;  3I4N F;  5M5X F;  4MEX E;  3HOU F;  2E2J F;  3GTM F;  4Q5S E;  3CQZ F;  1K83 F;  2WAQ K;  1SMY E;  3H0G F;  4OIQ E;  5IYB F;  5D4E E;  2NVT F;  3HOV F;  5M5W F;  2B63 F;  3GTL F;  5E18 E;  5IYC F;  4BBR F;  4C2M F;  4A3M F;  5IPL E;  1YNN K;  3GTO F;  2R92 F;  5IYD F;  2A69 E;  1QKL A;  4C3H F;  1R9T F;  4OIO E;  3S16 F;  4C3J F;  3PO3 F;  5TMF E;  2KRX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.