2P9S | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	167
structure length	167
Chain Sequence	TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Insights into the Influence of Nucleotides on Actin Family Proteins from Seven Structures of Arp2/3 Complex. pubmed doi rcsb
molecule keywords	Actin-like protein 3
molecule tags	Structural protein
source organism	Bos taurus
total genus	57
structure length	167
sequence length	167
ec nomenclature
pdb deposition date	2007-03-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
F	PF05856	ARPC4	ARP2/3 complex 20 kDa subunit (ARPC4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.20	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	2p9sF00

2P9ID 2P9KF 1K8KD 3RSED 3UKUD 3DXKD 3DXMF 2P9PD 3DWLF 3UKRF 2P9SF 4XEID 1TYQF 3ULEF 2P9KD 3DXMD 3UKRD 3DWLD 2P9SD 1U2VF 4JD2F 1TYQD 2P9NF 3ULED 2P9LF 2P9UF 2P9IF 1K8KF 1U2VD 2P9ND 4JD2D 3UKUF 3DXKF 3RSEF 2P9PF 2P9LD 2P9UD 4XEIF
chains in the Genus database with same CATH superfamily

2P9ID 2P9KF 1K8KD 3RSED 3UKUD 2BSJA 3DXKD 3DXMF 4G6TA 2BSIA 2P9PD 3DWLF 3UKRF 1JYAA 2P9SF 2BSHA 4XEID 2KC5A 2FM8A 1TYQF 2PLGA 1RY9A 3ULEF 4H5BA 2P9KD 2MQDA 3VX7B 1TTWA 3DXMD 1XKPC 2LPUA 3UKRD 1K6ZA 3DWLD 1K3SA 1U2VF 2P9SD 4GF3A 4JD2F 1TYQD 1JYOA 2P9NF 2BHOA 4JMFB 3ULED 4EBRA 4GSLC 3VX8B 4AKXA 2P9LF 1S28A 1K3EA 2P9UF 2DYTA 1L2WA 2P9IF 1K8KF 1U2VD 2P9ND 3EPUA 4JD2D 3DXKF 3RSEF 3KXYA 3UKUF 3TU3A 2P9PF 2OD0A 1N5BA 2P9LD 2XGAA 3CXJA 2P9UD 4XEIF 1XKPB
chains in the Genus database with same CATH topology

2P9ID 2P9KF 1K8KD 3RSED 3UKUD 2BSJA 3DXKD 3DXMF 4G6TA 2BSIA 2P9PD 3DWLF 3UKRF 1JYAA 2P9SF 2BSHA 4XEID 2KC5A 2FM8A 1TYQF 2PLGA 1RY9A 3ULEF 4H5BA 2P9KD 2MQDA 3VX7B 1TTWA 3DXMD 1XKPC 2LPUA 3UKRD 1K6ZA 3DWLD 1K3SA 1U2VF 2P9SD 4GF3A 4JD2F 1TYQD 1JYOA 2P9NF 2BHOA 4JMFB 3ULED 4EBRA 4GSLC 3VX8B 4AKXA 2P9LF 1S28A 1K3EA 2P9UF 2DYTA 1L2WA 2P9IF 1K8KF 1U2VD 2P9ND 3EPUA 4JD2D 3DXKF 3RSEF 3KXYA 3UKUF 3TU3A 2P9PF 1N5BA 2P9LD 2XGAA 3CXJA 2P9UD 4XEIF 1XKPB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2P9I D;  2P9K F;  1K8K D;  3RSE D;  3UKU D;  3DXK D;  3DXM F;  2P9P D;  3DWL F;  3UKR F;  2P9S F;  4XEI D;  1TYQ F;  3ULE F;  2P9K D;  3DXM D;  3UKR D;  3DWL D;  2P9S D;  1U2V F;  4JD2 F;  1TYQ D;  2P9N F;  3ULE D;  2P9L F;  2P9U F;  2P9I F;  1K8K F;  1U2V D;  2P9N D;  4JD2 D;  3UKU F;  3DXK F;  3RSE F;  2P9P F;  2P9L D;  2P9U D;  4XEI F; 
#chains in the Genus database with same CATH topology
 2P9I D;  2P9K F;  1K8K D;  3RSE D;  3UKU D;  2BSJ A;  3DXK D;  3DXM F;  4G6T A;  2BSI A;  2P9P D;  3DWL F;  3UKR F;  1JYA A;  2P9S F;  2BSH A;  4XEI D;  2KC5 A;  2FM8 A;  1TYQ F;  2PLG A;  1RY9 A;  3ULE F;  4H5B A;  2P9K D;  2MQD A;  3VX7 B;  1TTW A;  3DXM D;  1XKP C;  2LPU A;  3UKR D;  1K6Z A;  3DWL D;  1K3S A;  1U2V F;  2P9S D;  4GF3 A;  4JD2 F;  1TYQ D;  1JYO A;  2P9N F;  2BHO A;  4JMF B;  3ULE D;  4EBR A;  4GSL C;  3VX8 B;  4AKX A;  2P9L F;  1S28 A;  1K3E A;  2P9U F;  2DYT A;  1L2W A;  2P9I F;  1K8K F;  1U2V D;  2P9N D;  3EPU A;  4JD2 D;  3DXK F;  3RSE F;  3KXY A;  3UKU F;  3TU3 A;  2P9P F;  2OD0 A;  1N5B A;  2P9L D;  2XGA A;  3CXJ A;  2P9U D;  4XEI F;  1XKP B; 
#chains in the Genus database with same CATH homology
 2P9I D;  2P9K F;  1K8K D;  3RSE D;  3UKU D;  2BSJ A;  3DXK D;  3DXM F;  4G6T A;  2BSI A;  2P9P D;  3DWL F;  3UKR F;  1JYA A;  2P9S F;  2BSH A;  4XEI D;  2KC5 A;  2FM8 A;  1TYQ F;  2PLG A;  1RY9 A;  3ULE F;  4H5B A;  2P9K D;  2MQD A;  3VX7 B;  1TTW A;  3DXM D;  1XKP C;  2LPU A;  3UKR D;  1K6Z A;  3DWL D;  1K3S A;  1U2V F;  2P9S D;  4GF3 A;  4JD2 F;  1TYQ D;  1JYO A;  2P9N F;  2BHO A;  4JMF B;  3ULE D;  4EBR A;  4GSL C;  3VX8 B;  4AKX A;  2P9L F;  1S28 A;  1K3E A;  2P9U F;  2DYT A;  1L2W A;  2P9I F;  1K8K F;  1U2V D;  2P9N D;  3EPU A;  4JD2 D;  3DXK F;  3RSE F;  3KXY A;  3UKU F;  3TU3 A;  2P9P F;  1N5B A;  2P9L D;  2XGA A;  3CXJ A;  2P9U D;  4XEI F;  1XKP B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2P9SF

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations