2PK0 | Genus

Total Genus 75

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	75
sequence length	247
structure length	247
Chain Sequence	ARKKYMEISLLTDIGQRRSNNQDFINQFENKAGVPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSEIRDWMLVSIETENRKIYELGQSDDYKGMGTTIEAVAIVGDNIIFAHVGDSRIGIVRQGEYHLLTSDHSLVNELVKAGQLTEEEAASHPQKNIITQSIGQANPVEPDLGVHLLEEGDYLVVNSDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANHRGGLDNITVALVYVES

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 247 atoms

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247 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Streptococcus agalactiae
publication title	Structure of Streptococcus agalactiae serine/threonine phosphatase. The subdomain conformation is coupled to the binding of a third metal ion pubmed doi rcsb
molecule keywords	Serine/threonine protein phosphatase Stp1
total genus	75
structure length	247
sequence length	247
chains with identical sequence	B, C, D
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2007-04-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13672	PP2C_2	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	2pk0A00

2Y09A 4YZGA 4LGBB 2V06A 5ITIA 2POMA 3N3CA 3UJGB 2JFRA 2P8EA 4RA2A 2J86A 3F79A 3RNRA 2IQ1A 3MQ3A 2POPA 3T91A 3ZVUB 2J82A 3W41A 2PNQA 3JRQA 3QN1B 2CM1A 3FXJA 3W43A 5JO1B 3FXKA 4LGAB 4N0GA 1A6QA 3EQ2A 2JFSA 2PK0A 4JNDA 4LA7B 4YZHA 2I0OA 4RAGA 4OICB 3KE6A 3W44A 3PU9A 3W40A 2JFTA 3NMTB 4WVOB 3UJLB 3FXOA 2J4OA 5JO2B 3UJKA 3KDJB 4RAFA 3FXMA 2ISNA 3FXLA 4DS8B 3NMVB 3W42A 3NMNB 3T9QA 3D8KA 4LG5B 2IRMA 3KB3B 3ZT9A 3W45A 2XZVA 4DA1A 5D2UA 3ES2A 5F1MA 3RT0A 2I44A 1TXOA
chains in the Genus database with same CATH superfamily

2Y09A 4YZGA 4LGBB 2V06A 5ITIA 2POMA 3N3CA 3UJGB 2JFRA 2P8EA 4RA2A 2J86A 3F79A 3RNRA 2IQ1A 3MQ3A 2POPA 3T91A 3ZVUB 2J82A 3W41A 4IIKA 2PNQA 3JRQA 3QN1B 2CM1A 3FXJA 3W43A 5JO1B 3FXKA 4LGAB 4N0GA 1A6QA 3EQ2A 2JFSA 2PK0A 4JNDA 4LA7B 4YZHA 2I0OA 4RAGA 4OICB 3KE6A 3W44A 3PU9A 3W40A 2JFTA 3NMTB 4WVOB 3UJLB 3FXOA 2J4OA 4IIPA 5JO2B 3UJKA 3KDJB 4RAFA 3FXMA 2ISNA 3FXLA 4DS8B 3NMVB 3W42A 3NMNB 3T9QA 3D8KA 4LG5B 2IRMA 3KB3B 3ZT9A 3W45A 2XZVA 4DA1A 5D2UA 3ES2A 5F1MA 3RT0A 2I44A 1TXOA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2Y09 A;  4YZG A;  4LGB B;  2V06 A;  5ITI A;  2POM A;  3N3C A;  3UJG B;  2JFR A;  2P8E A;  4RA2 A;  2J86 A;  3F79 A;  3RNR A;  2IQ1 A;  3MQ3 A;  2POP A;  3T91 A;  3ZVU B;  2J82 A;  3W41 A;  2PNQ A;  3JRQ A;  3QN1 B;  2CM1 A;  3FXJ A;  3W43 A;  5JO1 B;  3FXK A;  4LGA B;  4N0G A;  1A6Q A;  3EQ2 A;  2JFS A;  2PK0 A;  4JND A;  4LA7 B;  4YZH A;  2I0O A;  4RAG A;  4OIC B;  3KE6 A;  3W44 A;  3PU9 A;  3W40 A;  2JFT A;  3NMT B;  4WVO B;  3UJL B;  3FXO A;  2J4O A;  5JO2 B;  3UJK A;  3KDJ B;  4RAF A;  3FXM A;  2ISN A;  3FXL A;  4DS8 B;  3NMV B;  3W42 A;  3NMN B;  3T9Q A;  3D8K A;  4LG5 B;  2IRM A;  3KB3 B;  3ZT9 A;  3W45 A;  2XZV A;  4DA1 A;  5D2U A;  3ES2 A;  5F1M A;  3RT0 A;  2I44 A;  1TXO A; 
#chains in the Genus database with same CATH topology
 2Y09 A;  4YZG A;  4LGB B;  2V06 A;  5ITI A;  2POM A;  3N3C A;  3UJG B;  2JFR A;  2P8E A;  4RA2 A;  2J86 A;  3F79 A;  3RNR A;  2IQ1 A;  3MQ3 A;  2POP A;  3T91 A;  3ZVU B;  2J82 A;  3W41 A;  4IIK A;  2PNQ A;  3JRQ A;  3QN1 B;  2CM1 A;  3FXJ A;  3W43 A;  5JO1 B;  3FXK A;  4LGA B;  4N0G A;  1A6Q A;  3EQ2 A;  2JFS A;  2PK0 A;  4JND A;  4LA7 B;  4YZH A;  2I0O A;  4RAG A;  4OIC B;  3KE6 A;  3W44 A;  3PU9 A;  3W40 A;  2JFT A;  3NMT B;  4WVO B;  3UJL B;  3FXO A;  2J4O A;  4IIP A;  5JO2 B;  3UJK A;  3KDJ B;  4RAF A;  3FXM A;  2ISN A;  3FXL A;  4DS8 B;  3NMV B;  3W42 A;  3NMN B;  3T9Q A;  3D8K A;  4LG5 B;  2IRM A;  3KB3 B;  3ZT9 A;  3W45 A;  2XZV A;  4DA1 A;  5D2U A;  3ES2 A;  5F1M A;  3RT0 A;  2I44 A;  1TXO A; 
#chains in the Genus database with same CATH homology
 2Y09 A;  4YZG A;  4LGB B;  2V06 A;  5ITI A;  2POM A;  3N3C A;  3UJG B;  2JFR A;  2P8E A;  4RA2 A;  2J86 A;  3F79 A;  3RNR A;  2IQ1 A;  3MQ3 A;  2POP A;  3T91 A;  3ZVU B;  2J82 A;  3W41 A;  2PNQ A;  3JRQ A;  3QN1 B;  2CM1 A;  3FXJ A;  3W43 A;  5JO1 B;  3FXK A;  4LGA B;  4N0G A;  1A6Q A;  3EQ2 A;  2JFS A;  2PK0 A;  4JND A;  4LA7 B;  4YZH A;  2I0O A;  4RAG A;  4OIC B;  3KE6 A;  3W44 A;  3PU9 A;  3W40 A;  2JFT A;  3NMT B;  4WVO B;  3UJL B;  3FXO A;  2J4O A;  5JO2 B;  3UJK A;  3KDJ B;  4RAF A;  3FXM A;  2ISN A;  3FXL A;  4DS8 B;  3NMV B;  3W42 A;  3NMN B;  3T9Q A;  3D8K A;  4LG5 B;  2IRM A;  3KB3 B;  3ZT9 A;  3W45 A;  2XZV A;  4DA1 A;  5D2U A;  3ES2 A;  5F1M A;  3RT0 A;  2I44 A;  1TXO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2PK0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations